Cluster: SW162_30_sub_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: SW162_30_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_101977 | k141_101977_75 | 78856 | 79299 | + | 4.A.6.1.16 |
| pfam | k141_101977 | k141_101977_76 | 79299 | 79580 | + | YajC |
| TC | k141_101977 | k141_101977_77 | 79617 | 80099 | + | 4.A.6.1.4 |
| TC | k141_101977 | k141_101977_78 | 80190 | 80990 | + | 4.A.6.1.4 |
| TC | k141_101977 | k141_101977_79 | 80980 | 82062 | + | 4.A.6.1.4 |
| TF | k141_101977 | k141_101977_80 | 82247 | 82978 | + | GntR |
| STP | k141_101977 | k141_101977_81 | 83093 | 84259 | + | SIS | SIS |
| CAZyme | k141_101977 | k141_101977_82 | 84379 | 85548 | + | CE9 |
Gene ID: k141_101977_75
Type: TC
Location: 78856 - 79299 (+)
Type: TC
Location: 78856 - 79299 (+)
Gene ID: k141_101977_76
Type: pfam
Location: 79299 - 79580 (+)
Type: pfam
Location: 79299 - 79580 (+)
Gene ID: k141_101977_77
Type: TC
Location: 79617 - 80099 (+)
Type: TC
Location: 79617 - 80099 (+)
Gene ID: k141_101977_78
Type: TC
Location: 80190 - 80990 (+)
Type: TC
Location: 80190 - 80990 (+)
Gene ID: k141_101977_79
Type: TC
Location: 80980 - 82062 (+)
Type: TC
Location: 80980 - 82062 (+)
Gene ID: k141_101977_80
Type: TF
Location: 82247 - 82978 (+)
Type: TF
Location: 82247 - 82978 (+)
Gene ID: k141_101977_81
Type: STP
Location: 83093 - 84259 (+)
Type: STP
Location: 83093 - 84259 (+)
Gene ID: k141_101977_82
Type: CAZyme
Location: 84379 - 85548 (+)
Type: CAZyme
Location: 84379 - 85548 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.