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Cluster: SW145_3_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_59581 k141_59581_34 34113 34748 - 5.A.3.2.1
TC k141_59581 k141_59581_35 34745 35647 - 5.A.3.2.1
TC k141_59581 k141_59581_36 35660 38074 - 5.A.3.2.1
TC k141_59581 k141_59581_37 38123 38710 - 5.A.3.2.1
pfam k141_59581 k141_59581_38 39082 39918 + FdhD-NarQ
pfam k141_59581 k141_59581_39 40033 40245 + YdgH_BhsA-like
TC k141_59581 k141_59581_40 40286 40609 - 2.A.78.2.3
TC k141_59581 k141_59581_41 40609 41268 - 2.A.78.2.3
TF k141_59581 k141_59581_42 41372 41920 + HTH_3
TF k141_59581 k141_59581_43 41938 42933 + LacI
CAZyme k141_59581 k141_59581_44 43039 45162 + GH36
TC k141_59581 k141_59581_45 45207 46484 + 2.A.1.5.4
pfam k141_59581 k141_59581_46 46472 46786 - rhaM
pfam k141_59581 k141_59581_47 46783 47931 - Fe-ADH | Fe-ADH_2 | ADH_Fe_C
TC k141_59581 k141_59581_48 48067 49056 - 3.A.1.2.8
TC k141_59581 k141_59581_49 49065 50069 - 3.A.1.2.9
TC k141_59581 k141_59581_50 50069 51571 - 3.A.1.2.9
TC k141_59581 k141_59581_51 51671 52657 - 3.A.1.2.9
Gene ID: k141_59581_34
Type: TC
Location: 34113 - 34748 (-)
Gene ID: k141_59581_35
Type: TC
Location: 34745 - 35647 (-)
Gene ID: k141_59581_36
Type: TC
Location: 35660 - 38074 (-)
Gene ID: k141_59581_37
Type: TC
Location: 38123 - 38710 (-)
Gene ID: k141_59581_38
Type: pfam
Location: 39082 - 39918 (+)
Gene ID: k141_59581_39
Type: pfam
Location: 40033 - 40245 (+)
Gene ID: k141_59581_40
Type: TC
Location: 40286 - 40609 (-)
Gene ID: k141_59581_41
Type: TC
Location: 40609 - 41268 (-)
Gene ID: k141_59581_42
Type: TF
Location: 41372 - 41920 (+)
Gene ID: k141_59581_43
Type: TF
Location: 41938 - 42933 (+)
Gene ID: k141_59581_44
Type: CAZyme
Location: 43039 - 45162 (+)
Gene ID: k141_59581_45
Type: TC
Location: 45207 - 46484 (+)
Gene ID: k141_59581_46
Type: pfam
Location: 46472 - 46786 (-)
Gene ID: k141_59581_47
Type: pfam
Location: 46783 - 47931 (-)
Gene ID: k141_59581_48
Type: TC
Location: 48067 - 49056 (-)
Gene ID: k141_59581_49
Type: TC
Location: 49065 - 50069 (-)
Gene ID: k141_59581_50
Type: TC
Location: 50069 - 51571 (-)
Gene ID: k141_59581_51
Type: TC
Location: 51671 - 52657 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_59581_40 vegetarian > omnivore 1.52668 0.03328
k141_59581_41 vegetarian > omnivore 1.48403 0.03328
k141_59581_41 vegetarian > vegan 1.26899 0.04464
k141_59581_43 vegetarian > vegan 1.21558 0.04464
k141_59581_45 vegetarian > vegan 1.24135 0.04464
k141_59581_45 vegetarian > omnivore 1.98073 0.03328
k141_59581_47 vegetarian > vegan 1.16453 0.04464
k141_59581_47 vegetarian > omnivore 1.17559 0.03328
k141_59581_48 vegetarian > vegan 1.02017 0.04464
k141_59581_49 vegetarian > vegan 1.13891 0.04464
k141_59581_50 vegetarian > vegan 1.10112 0.04464
k141_59581_50 vegetarian > omnivore 1.18423 0.03328
k141_59581_51 vegetarian > omnivore 1.23631 0.03328

🧭 Explore Read Mapping of CGC

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