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Cluster: SW134_3_sub_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_168879 k141_168879_6 4146 5138 - 3.A.1.2.1
TC k141_168879 k141_168879_7 5131 6678 - 3.A.1.2.1
STP k141_168879 k141_168879_8 6760 7836 - Peripla_BP_1
TF k141_168879 k141_168879_9 8176 9051 - HTH_6
TC k141_168879 k141_168879_10 9712 10230 - 3.D.1.8.1
pfam k141_168879 k141_168879_11 10230 10694 - SmpB
pfam k141_168879 k141_168879_12 10763 11560 - Hydrolase | PGP_phosphatase | Hydrolase_like | Hydrolase_6
CAZyme k141_168879 k141_168879_13 11684 13990 + GH2
NULL(UNKNOWN) k141_168879 k141_168879_14 14008 14802 + NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_168879 k141_168879_15 14815 18027 + SLH | SLH | SLH | Lipase_3
TC k141_168879 k141_168879_16 18175 19035 + 2.A.7.2.1
Gene ID: k141_168879_6
Type: TC
Location: 4146 - 5138 (-)
Gene ID: k141_168879_7
Type: TC
Location: 5131 - 6678 (-)
Gene ID: k141_168879_8
Type: STP
Location: 6760 - 7836 (-)
Gene ID: k141_168879_9
Type: TF
Location: 8176 - 9051 (-)
Gene ID: k141_168879_10
Type: TC
Location: 9712 - 10230 (-)
Gene ID: k141_168879_11
Type: pfam
Location: 10230 - 10694 (-)
Gene ID: k141_168879_12
Type: pfam
Location: 10763 - 11560 (-)
Gene ID: k141_168879_13
Type: CAZyme
Location: 11684 - 13990 (+)
Gene ID: k141_168879_14
Type:
Location: 14008 - 14802 (+)
Gene ID: k141_168879_15
Type: pfam
Location: 14815 - 18027 (+)
Gene ID: k141_168879_16
Type: TC
Location: 18175 - 19035 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_168879_9 vegetarian > vegan 1.41183 0.01287
k141_168879_11 vegetarian > vegan 1.69094 0.01287
k141_168879_14 vegetarian > vegan 2.06669 0.01287

🧭 Explore Read Mapping of CGC

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