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Cluster: SW134_30_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_23287 k141_23287_6 4714 5403 + 3.A.1.3.20
TC k141_23287 k141_23287_7 5390 6295 + 3.A.1.3.25
TF k141_23287 k141_23287_8 6500 7465 - HTH_AraC | HTH_AraC
CAZyme k141_23287 k141_23287_9 7610 9667 + GH36
STP k141_23287 k141_23287_10 9680 11302 + SBP_bac_1
pfam k141_23287 k141_23287_11 11299 12222 + BPD_transp_1
TC k141_23287 k141_23287_12 12215 13123 + 3.A.1.1.20
NULL(UNKNOWN) k141_23287 k141_23287_13 13154 16408 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_23287 k141_23287_14 16440 18410 + GH163
Gene ID: k141_23287_6
Type: TC
Location: 4714 - 5403 (+)
Gene ID: k141_23287_7
Type: TC
Location: 5390 - 6295 (+)
Gene ID: k141_23287_8
Type: TF
Location: 6500 - 7465 (-)
Gene ID: k141_23287_9
Type: CAZyme
Location: 7610 - 9667 (+)
Gene ID: k141_23287_10
Type: STP
Location: 9680 - 11302 (+)
Gene ID: k141_23287_11
Type: pfam
Location: 11299 - 12222 (+)
Gene ID: k141_23287_12
Type: TC
Location: 12215 - 13123 (+)
Gene ID: k141_23287_13
Type:
Location: 13154 - 16408 (+)
Gene ID: k141_23287_14
Type: CAZyme
Location: 16440 - 18410 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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