Cluster: SW108_22_sub_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SW108_22_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_80272 | k141_80272_41 | 49646 | 52654 | + | GH2 |
| NULL(UNKNOWN) | k141_80272 | k141_80272_42 | 52658 | 53113 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_80272 | k141_80272_43 | 53267 | 54730 | + | 2.A.3.7.4 |
| STP | k141_80272 | k141_80272_44 | 55153 | 55401 | + | PTS-HPr |
| STP | k141_80272 | k141_80272_45 | 55590 | 55832 | + | FeoA |
| TC | k141_80272 | k141_80272_46 | 55872 | 56093 | + | 9.A.8.1.6 |
| TC | k141_80272 | k141_80272_47 | 56217 | 58544 | + | 9.A.8.1.6 |
Gene ID: k141_80272_41
Type: CAZyme
Location: 49646 - 52654 (+)
Type: CAZyme
Location: 49646 - 52654 (+)
Gene ID: k141_80272_42
Type:
Location: 52658 - 53113 (+)
Type:
Location: 52658 - 53113 (+)
Gene ID: k141_80272_43
Type: TC
Location: 53267 - 54730 (+)
Type: TC
Location: 53267 - 54730 (+)
Gene ID: k141_80272_44
Type: STP
Location: 55153 - 55401 (+)
Type: STP
Location: 55153 - 55401 (+)
Gene ID: k141_80272_45
Type: STP
Location: 55590 - 55832 (+)
Type: STP
Location: 55590 - 55832 (+)
Gene ID: k141_80272_46
Type: TC
Location: 55872 - 56093 (+)
Type: TC
Location: 55872 - 56093 (+)
Gene ID: k141_80272_47
Type: TC
Location: 56217 - 58544 (+)
Type: TC
Location: 56217 - 58544 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.