Cluster: SW108_22_sub_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: SW108_22_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_91505 | k141_91505_24 | 27958 | 29127 | - | CE9 |
| STP | k141_91505 | k141_91505_25 | 29246 | 30412 | - | SIS | SIS |
| TF | k141_91505 | k141_91505_26 | 30527 | 31258 | - | GntR |
| TC | k141_91505 | k141_91505_27 | 31444 | 32526 | - | 4.A.6.1.4 |
| TC | k141_91505 | k141_91505_28 | 32516 | 33316 | - | 4.A.6.1.4 |
| TC | k141_91505 | k141_91505_29 | 33407 | 33889 | - | 4.A.6.1.4 |
| pfam | k141_91505 | k141_91505_30 | 33926 | 34207 | - | YajC |
| TC | k141_91505 | k141_91505_31 | 34207 | 34650 | - | 4.A.6.1.16 |
Gene ID: k141_91505_24
Type: CAZyme
Location: 27958 - 29127 (-)
Type: CAZyme
Location: 27958 - 29127 (-)
Gene ID: k141_91505_25
Type: STP
Location: 29246 - 30412 (-)
Type: STP
Location: 29246 - 30412 (-)
Gene ID: k141_91505_26
Type: TF
Location: 30527 - 31258 (-)
Type: TF
Location: 30527 - 31258 (-)
Gene ID: k141_91505_27
Type: TC
Location: 31444 - 32526 (-)
Type: TC
Location: 31444 - 32526 (-)
Gene ID: k141_91505_28
Type: TC
Location: 32516 - 33316 (-)
Type: TC
Location: 32516 - 33316 (-)
Gene ID: k141_91505_29
Type: TC
Location: 33407 - 33889 (-)
Type: TC
Location: 33407 - 33889 (-)
Gene ID: k141_91505_30
Type: pfam
Location: 33926 - 34207 (-)
Type: pfam
Location: 33926 - 34207 (-)
Gene ID: k141_91505_31
Type: TC
Location: 34207 - 34650 (-)
Type: TC
Location: 34207 - 34650 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_91505_30 | vegan > omnivore | 1.07175 | 0.00566 |