Cluster: SW106_bin.36_CGC17
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: SW106_bin.36
- CGC Family ID: CGCFAM_01608
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_99134 | k141_99134_3 | 2779 | 3909 | + | GT2 |
| CAZyme | k141_99134 | k141_99134_4 | 3936 | 5159 | + | GT4 |
| pfam | k141_99134 | k141_99134_5 | 5178 | 6125 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | k141_99134 | k141_99134_6 | 6348 | 9629 | + | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_99134 | k141_99134_7 | 10011 | 13391 | + | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_99134 | k141_99134_8 | 13463 | 16987 | + | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_99134 | k141_99134_9 | 17018 | 19468 | + | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | k141_99134 | k141_99134_10 | 19484 | 24463 | + | CBM13 | CBM13 | CBM13 | CBM13 | GH25 |
| TC | k141_99134 | k141_99134_11 | 24488 | 25519 | + | 9.B.97.1.2 |
| pfam | k141_99134 | k141_99134_12 | 25700 | 27406 | + | DUF6020 |
| CAZyme | k141_99134 | k141_99134_13 | 27423 | 28352 | + | GT2 |
| CAZyme | k141_99134 | k141_99134_14 | 28449 | 31460 | + | GT111 | GT2 | GT8 |
| TC | k141_99134 | k141_99134_15 | 31614 | 32459 | + | 3.A.1.103.6 |
| TC | k141_99134 | k141_99134_16 | 32469 | 33257 | + | 3.A.1.103.1 |
| pfam | k141_99134 | k141_99134_17 | 33506 | 35242 | + | CW_binding_2 | CW_binding_2 | CW_binding_2 |
| CAZyme | k141_99134 | k141_99134_18 | 35610 | 39029 | - | CBM13 | CBM13 |
Gene ID: k141_99134_3
Type: CAZyme
Location: 2779 - 3909 (+)
Type: CAZyme
Location: 2779 - 3909 (+)
Gene ID: k141_99134_4
Type: CAZyme
Location: 3936 - 5159 (+)
Type: CAZyme
Location: 3936 - 5159 (+)
Gene ID: k141_99134_5
Type: pfam
Location: 5178 - 6125 (+)
Type: pfam
Location: 5178 - 6125 (+)
Gene ID: k141_99134_6
Type: CAZyme
Location: 6348 - 9629 (+)
Type: CAZyme
Location: 6348 - 9629 (+)
Gene ID: k141_99134_7
Type: CAZyme
Location: 10011 - 13391 (+)
Type: CAZyme
Location: 10011 - 13391 (+)
Gene ID: k141_99134_8
Type: CAZyme
Location: 13463 - 16987 (+)
Type: CAZyme
Location: 13463 - 16987 (+)
Gene ID: k141_99134_9
Type: CAZyme
Location: 17018 - 19468 (+)
Type: CAZyme
Location: 17018 - 19468 (+)
Gene ID: k141_99134_10
Type: CAZyme
Location: 19484 - 24463 (+)
Type: CAZyme
Location: 19484 - 24463 (+)
Gene ID: k141_99134_11
Type: TC
Location: 24488 - 25519 (+)
Type: TC
Location: 24488 - 25519 (+)
Gene ID: k141_99134_12
Type: pfam
Location: 25700 - 27406 (+)
Type: pfam
Location: 25700 - 27406 (+)
Gene ID: k141_99134_13
Type: CAZyme
Location: 27423 - 28352 (+)
Type: CAZyme
Location: 27423 - 28352 (+)
Gene ID: k141_99134_14
Type: CAZyme
Location: 28449 - 31460 (+)
Type: CAZyme
Location: 28449 - 31460 (+)
Gene ID: k141_99134_15
Type: TC
Location: 31614 - 32459 (+)
Type: TC
Location: 31614 - 32459 (+)
Gene ID: k141_99134_16
Type: TC
Location: 32469 - 33257 (+)
Type: TC
Location: 32469 - 33257 (+)
Gene ID: k141_99134_17
Type: pfam
Location: 33506 - 35242 (+)
Type: pfam
Location: 33506 - 35242 (+)
Gene ID: k141_99134_18
Type: CAZyme
Location: 35610 - 39029 (-)
Type: CAZyme
Location: 35610 - 39029 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.