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Cluster: SW101_40_sub_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_24798 k141_24798_4 2970 5483 - 1.B.14.6.14
pfam k141_24798 k141_24798_5 5573 6064 + tRNA_edit
CAZyme k141_24798 k141_24798_6 6073 7260 - GT4
pfam k141_24798 k141_24798_7 7214 8284 - Radical_SAM | SPASM
CAZyme k141_24798 k141_24798_8 8286 9467 - GT4
pfam k141_24798 k141_24798_9 9533 10507 - Acyl_transf_3
CAZyme k141_24798 k141_24798_10 10514 11635 - GT4
CAZyme k141_24798 k141_24798_11 11640 12749 - GT4
Gene ID: k141_24798_4
Type: TC
Location: 2970 - 5483 (-)
Gene ID: k141_24798_5
Type: pfam
Location: 5573 - 6064 (+)
Gene ID: k141_24798_6
Type: CAZyme
Location: 6073 - 7260 (-)
Gene ID: k141_24798_7
Type: pfam
Location: 7214 - 8284 (-)
Gene ID: k141_24798_8
Type: CAZyme
Location: 8286 - 9467 (-)
Gene ID: k141_24798_9
Type: pfam
Location: 9533 - 10507 (-)
Gene ID: k141_24798_10
Type: CAZyme
Location: 10514 - 11635 (-)
Gene ID: k141_24798_11
Type: CAZyme
Location: 11640 - 12749 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_24798_6 vegan > omnivore 2.21873 0.00343
k141_24798_8 vegan > omnivore 1.34462 0.00343
k141_24798_10 vegan > omnivore 3.34631 0.00343
k141_24798_10 vegetarian > omnivore 2.06705 0.04255
k141_24798_11 vegan > omnivore 3.68159 0.00343
k141_24798_11 vegetarian > omnivore 2.63890 0.04255

🧭 Explore Read Mapping of CGC

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