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Cluster: SW099_7_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_257221 k141_257221_5 3577 5001 - GH39
CAZyme k141_257221 k141_257221_6 5219 7066 - GH146
TF k141_257221 k141_257221_7 7182 7979 + HTH_AraC
pfam k141_257221 k141_257221_8 8188 9723 + DUF3502
CAZyme k141_257221 k141_257221_9 9877 11550 - GH5
pfam k141_257221 k141_257221_10 11582 12547 - AP_endonuc_2 | UxuA | UxuA
TF k141_257221 k141_257221_11 12696 13535 + HTH_AraC | HTH_AraC
TC k141_257221 k141_257221_12 13835 14764 + 3.A.1.5.2
CAZyme k141_257221 k141_257221_13 14777 15754 + CE20
TC k141_257221 k141_257221_14 15777 16835 + 3.A.1.5.2
TC k141_257221 k141_257221_15 16858 17895 + 3.A.1.5.12
TC k141_257221 k141_257221_16 17892 18878 + 3.A.1.5.20
TC k141_257221 k141_257221_17 18937 20775 + 3.A.1.5.2
Gene ID: k141_257221_5
Type: CAZyme
Location: 3577 - 5001 (-)
Gene ID: k141_257221_6
Type: CAZyme
Location: 5219 - 7066 (-)
Gene ID: k141_257221_7
Type: TF
Location: 7182 - 7979 (+)
Gene ID: k141_257221_8
Type: pfam
Location: 8188 - 9723 (+)
Gene ID: k141_257221_9
Type: CAZyme
Location: 9877 - 11550 (-)
Gene ID: k141_257221_10
Type: pfam
Location: 11582 - 12547 (-)
Gene ID: k141_257221_11
Type: TF
Location: 12696 - 13535 (+)
Gene ID: k141_257221_12
Type: TC
Location: 13835 - 14764 (+)
Gene ID: k141_257221_13
Type: CAZyme
Location: 14777 - 15754 (+)
Gene ID: k141_257221_14
Type: TC
Location: 15777 - 16835 (+)
Gene ID: k141_257221_15
Type: TC
Location: 16858 - 17895 (+)
Gene ID: k141_257221_16
Type: TC
Location: 17892 - 18878 (+)
Gene ID: k141_257221_17
Type: TC
Location: 18937 - 20775 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_257221_12 vegetarian > vegan 1.06572 0.00565
k141_257221_14 vegetarian > vegan 1.86625 0.00565
k141_257221_17 vegetarian > vegan 1.07100 0.00565

🧭 Explore Read Mapping of CGC

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