Cluster: SW085_bin.20_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SW085_bin.20
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_1927 | k141_1927_4 | 2878 | 3804 | - | CE7 |
| TC | k141_1927 | k141_1927_5 | 3936 | 4763 | - | 3.A.1.5.27 |
| TC | k141_1927 | k141_1927_6 | 4764 | 6779 | - | 3.A.1.5.25 |
| TC | k141_1927 | k141_1927_7 | 6783 | 7739 | - | 3.A.1.5.38 |
| TC | k141_1927 | k141_1927_8 | 7897 | 9510 | - | 3.A.1.5.27 |
| pfam | k141_1927 | k141_1927_9 | 9876 | 11816 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | k141_1927 | k141_1927_10 | 11823 | 13505 | - | 2.A.66.4.4 |
Gene ID: k141_1927_4
Type: CAZyme
Location: 2878 - 3804 (-)
Type: CAZyme
Location: 2878 - 3804 (-)
Gene ID: k141_1927_5
Type: TC
Location: 3936 - 4763 (-)
Type: TC
Location: 3936 - 4763 (-)
Gene ID: k141_1927_6
Type: TC
Location: 4764 - 6779 (-)
Type: TC
Location: 4764 - 6779 (-)
Gene ID: k141_1927_7
Type: TC
Location: 6783 - 7739 (-)
Type: TC
Location: 6783 - 7739 (-)
Gene ID: k141_1927_8
Type: TC
Location: 7897 - 9510 (-)
Type: TC
Location: 7897 - 9510 (-)
Gene ID: k141_1927_9
Type: pfam
Location: 9876 - 11816 (-)
Type: pfam
Location: 9876 - 11816 (-)
Gene ID: k141_1927_10
Type: TC
Location: 11823 - 13505 (-)
Type: TC
Location: 11823 - 13505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.