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Cluster: SW085_bin.20_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_589 k141_589_1 33 1808 + 4.A.3.1.1
CAZyme k141_589 k141_589_2 1879 3318 + GH1
TF k141_589 k141_589_3 3595 4632 - LacI
CAZyme k141_589 k141_589_4 4974 6416 + GH1
TC k141_589 k141_589_5 6593 8353 + 4.A.3.1.1
TF k141_589 k141_589_6 8688 9698 - LacI
TC k141_589 k141_589_7 9974 11752 + 4.A.3.1.1
CAZyme k141_589 k141_589_8 11829 13250 + GH1
NULL(UNKNOWN) k141_589 k141_589_9 13627 13893 + NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_589 k141_589_10 13883 14188 + ParE_toxin
TC k141_589 k141_589_11 14548 16242 - 4.A.3.1.1
Gene ID: k141_589_1
Type: TC
Location: 33 - 1808 (+)
Gene ID: k141_589_2
Type: CAZyme
Location: 1879 - 3318 (+)
Gene ID: k141_589_3
Type: TF
Location: 3595 - 4632 (-)
Gene ID: k141_589_4
Type: CAZyme
Location: 4974 - 6416 (+)
Gene ID: k141_589_5
Type: TC
Location: 6593 - 8353 (+)
Gene ID: k141_589_6
Type: TF
Location: 8688 - 9698 (-)
Gene ID: k141_589_7
Type: TC
Location: 9974 - 11752 (+)
Gene ID: k141_589_8
Type: CAZyme
Location: 11829 - 13250 (+)
Gene ID: k141_589_9
Type:
Location: 13627 - 13893 (+)
Gene ID: k141_589_10
Type: pfam
Location: 13883 - 14188 (+)
Gene ID: k141_589_11
Type: TC
Location: 14548 - 16242 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_589_3 vegetarian > omnivore 1.06075 0.02677

🧭 Explore Read Mapping of CGC

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