Cluster: SW085_bin.20_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: SW085_bin.20
- CGC Family ID: CGCFAM_00002
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_47000 | k141_47000_8 | 8223 | 8936 | + | 9.B.18.1.2 |
| CAZyme | k141_47000 | k141_47000_9 | 9006 | 10040 | + | GT4 |
| pfam | k141_47000 | k141_47000_10 | 10326 | 11237 | + | PS_pyruv_trans |
| STP | k141_47000 | k141_47000_11 | 11246 | 12490 | + | Fer4 |
| CAZyme | k141_47000 | k141_47000_12 | 12487 | 13629 | + | GT4 |
| CAZyme | k141_47000 | k141_47000_13 | 14031 | 15089 | + | GT4 |
| CAZyme | k141_47000 | k141_47000_14 | 15076 | 16149 | + | GT4 |
Gene ID: k141_47000_8
Type: TC
Location: 8223 - 8936 (+)
Type: TC
Location: 8223 - 8936 (+)
Gene ID: k141_47000_9
Type: CAZyme
Location: 9006 - 10040 (+)
Type: CAZyme
Location: 9006 - 10040 (+)
Gene ID: k141_47000_10
Type: pfam
Location: 10326 - 11237 (+)
Type: pfam
Location: 10326 - 11237 (+)
Gene ID: k141_47000_11
Type: STP
Location: 11246 - 12490 (+)
Type: STP
Location: 11246 - 12490 (+)
Gene ID: k141_47000_12
Type: CAZyme
Location: 12487 - 13629 (+)
Type: CAZyme
Location: 12487 - 13629 (+)
Gene ID: k141_47000_13
Type: CAZyme
Location: 14031 - 15089 (+)
Type: CAZyme
Location: 14031 - 15089 (+)
Gene ID: k141_47000_14
Type: CAZyme
Location: 15076 - 16149 (+)
Type: CAZyme
Location: 15076 - 16149 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.