Cluster: SW085_bin.20_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: SW085_bin.20
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_5596 | k141_5596_13 | 15619 | 18069 | - | 4.A.1.1.8 |
| NULL(UNKNOWN) | k141_5596 | k141_5596_14 | 18091 | 18210 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_5596 | k141_5596_15 | 18294 | 19013 | + | GntR |
| TC | k141_5596 | k141_5596_16 | 19320 | 20636 | + | 3.A.1.1.45 |
| TC | k141_5596 | k141_5596_17 | 20724 | 21578 | + | 3.A.1.1.45 |
| TC | k141_5596 | k141_5596_18 | 21578 | 22417 | + | 3.A.1.1.45 |
| TC | k141_5596 | k141_5596_19 | 22486 | 23685 | + | 3.A.1.1.22 |
| CAZyme | k141_5596 | k141_5596_20 | 24142 | 26223 | - | GT35 |
Gene ID: k141_5596_13
Type: TC
Location: 15619 - 18069 (-)
Type: TC
Location: 15619 - 18069 (-)
Gene ID: k141_5596_14
Type:
Location: 18091 - 18210 (+)
Type:
Location: 18091 - 18210 (+)
Gene ID: k141_5596_15
Type: TF
Location: 18294 - 19013 (+)
Type: TF
Location: 18294 - 19013 (+)
Gene ID: k141_5596_16
Type: TC
Location: 19320 - 20636 (+)
Type: TC
Location: 19320 - 20636 (+)
Gene ID: k141_5596_17
Type: TC
Location: 20724 - 21578 (+)
Type: TC
Location: 20724 - 21578 (+)
Gene ID: k141_5596_18
Type: TC
Location: 21578 - 22417 (+)
Type: TC
Location: 21578 - 22417 (+)
Gene ID: k141_5596_19
Type: TC
Location: 22486 - 23685 (+)
Type: TC
Location: 22486 - 23685 (+)
Gene ID: k141_5596_20
Type: CAZyme
Location: 24142 - 26223 (-)
Type: CAZyme
Location: 24142 - 26223 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.