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Cluster: SW074_32_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_30164 k141_30164_56 57733 59427 + 4.A.3.1.1
STP k141_30164 k141_30164_57 59590 59970 + DeoRC
pfam k141_30164 k141_30164_58 59967 61199 - Fic
CAZyme k141_30164 k141_30164_59 61566 62987 - GH1
TC k141_30164 k141_30164_60 63064 64842 - 4.A.3.1.1
TF k141_30164 k141_30164_61 65127 66128 + LacI
TC k141_30164 k141_30164_62 66302 68062 - 4.A.3.1.1
CAZyme k141_30164 k141_30164_63 68239 69681 - GH1
TF k141_30164 k141_30164_64 70023 71060 + LacI
CAZyme k141_30164 k141_30164_65 71322 72761 - GH1
TC k141_30164 k141_30164_66 72958 74733 - 4.A.3.1.1
TF k141_30164 k141_30164_67 75090 76094 + LacI
TC k141_30164 k141_30164_68 76309 76647 + 4.A.3.1.2
Gene ID: k141_30164_56
Type: TC
Location: 57733 - 59427 (+)
Gene ID: k141_30164_57
Type: STP
Location: 59590 - 59970 (+)
Gene ID: k141_30164_58
Type: pfam
Location: 59967 - 61199 (-)
Gene ID: k141_30164_59
Type: CAZyme
Location: 61566 - 62987 (-)
Gene ID: k141_30164_60
Type: TC
Location: 63064 - 64842 (-)
Gene ID: k141_30164_61
Type: TF
Location: 65127 - 66128 (+)
Gene ID: k141_30164_62
Type: TC
Location: 66302 - 68062 (-)
Gene ID: k141_30164_63
Type: CAZyme
Location: 68239 - 69681 (-)
Gene ID: k141_30164_64
Type: TF
Location: 70023 - 71060 (+)
Gene ID: k141_30164_65
Type: CAZyme
Location: 71322 - 72761 (-)
Gene ID: k141_30164_66
Type: TC
Location: 72958 - 74733 (-)
Gene ID: k141_30164_67
Type: TF
Location: 75090 - 76094 (+)
Gene ID: k141_30164_68
Type: TC
Location: 76309 - 76647 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_30164_64 vegetarian > omnivore 1.05754 0.01867

🧭 Explore Read Mapping of CGC

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