Cluster: SW068_maxbin.012_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: SW068_maxbin.012
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_21663 | k141_21663_1 | 609 | 2099 | + | 4.A.1.1.7 |
| TF | k141_21663 | k141_21663_2 | 2332 | 3063 | + | GntR |
| CAZyme | k141_21663 | k141_21663_3 | 3207 | 4376 | + | CE9 |
| pfam | k141_21663 | k141_21663_4 | 4409 | 4882 | + | DUF386 |
| CAZyme | k141_21663 | k141_21663_5 | 5368 | 7164 | + | GH35 |
| TC | k141_21663 | k141_21663_6 | 7167 | 7631 | + | 4.A.6.1.18 |
| TC | k141_21663 | k141_21663_7 | 7725 | 8612 | + | 4.A.6.1.18 |
| TC | k141_21663 | k141_21663_8 | 8602 | 9441 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | k141_21663 | k141_21663_9 | 9630 | 10253 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_21663 | k141_21663_10 | 10335 | 10763 | + | 4.A.6.1.8 |
| TF | k141_21663 | k141_21663_11 | 10851 | 11585 | + | GntR |
| STP | k141_21663 | k141_21663_12 | 11697 | 12863 | + | SIS | SIS |
| CAZyme | k141_21663 | k141_21663_13 | 12979 | 14148 | + | CE9 |
Gene ID: k141_21663_1
Type: TC
Location: 609 - 2099 (+)
Type: TC
Location: 609 - 2099 (+)
Gene ID: k141_21663_2
Type: TF
Location: 2332 - 3063 (+)
Type: TF
Location: 2332 - 3063 (+)
Gene ID: k141_21663_3
Type: CAZyme
Location: 3207 - 4376 (+)
Type: CAZyme
Location: 3207 - 4376 (+)
Gene ID: k141_21663_4
Type: pfam
Location: 4409 - 4882 (+)
Type: pfam
Location: 4409 - 4882 (+)
Gene ID: k141_21663_5
Type: CAZyme
Location: 5368 - 7164 (+)
Type: CAZyme
Location: 5368 - 7164 (+)
Gene ID: k141_21663_6
Type: TC
Location: 7167 - 7631 (+)
Type: TC
Location: 7167 - 7631 (+)
Gene ID: k141_21663_7
Type: TC
Location: 7725 - 8612 (+)
Type: TC
Location: 7725 - 8612 (+)
Gene ID: k141_21663_8
Type: TC
Location: 8602 - 9441 (+)
Type: TC
Location: 8602 - 9441 (+)
Gene ID: k141_21663_9
Type:
Location: 9630 - 10253 (+)
Type:
Location: 9630 - 10253 (+)
Gene ID: k141_21663_10
Type: TC
Location: 10335 - 10763 (+)
Type: TC
Location: 10335 - 10763 (+)
Gene ID: k141_21663_11
Type: TF
Location: 10851 - 11585 (+)
Type: TF
Location: 10851 - 11585 (+)
Gene ID: k141_21663_12
Type: STP
Location: 11697 - 12863 (+)
Type: STP
Location: 11697 - 12863 (+)
Gene ID: k141_21663_13
Type: CAZyme
Location: 12979 - 14148 (+)
Type: CAZyme
Location: 12979 - 14148 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_21663_2 | vegetarian > vegan | 3.06392 | 0.01882 |
| k141_21663_5 | vegetarian > vegan | 2.57194 | 0.01882 |
| k141_21663_6 | vegetarian > vegan | 3.17917 | 0.01882 |
| k141_21663_7 | vegetarian > vegan | 2.31429 | 0.03865 |
| k141_21663_8 | vegetarian > vegan | 2.32194 | 0.01882 |