Cluster: SW062_81_sub_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: SW062_81_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_27592 | k141_27592_9 | 9329 | 10711 | - | GH4 |
| TC | k141_27592 | k141_27592_10 | 10715 | 12325 | - | 4.A.1.1.3 |
| pfam | k141_27592 | k141_27592_11 | 12425 | 13291 | - | PRD | PRD | CAT_RBD |
| TC | k141_27592 | k141_27592_12 | 13298 | 13810 | - | 4.A.1.2.5 |
| STP | k141_27592 | k141_27592_13 | 14091 | 14852 | - | Fer4 |
| TC | k141_27592 | k141_27592_14 | 15474 | 17732 | - | 1.I.1.1.3 |
Gene ID: k141_27592_9
Type: CAZyme
Location: 9329 - 10711 (-)
Type: CAZyme
Location: 9329 - 10711 (-)
Gene ID: k141_27592_10
Type: TC
Location: 10715 - 12325 (-)
Type: TC
Location: 10715 - 12325 (-)
Gene ID: k141_27592_11
Type: pfam
Location: 12425 - 13291 (-)
Type: pfam
Location: 12425 - 13291 (-)
Gene ID: k141_27592_12
Type: TC
Location: 13298 - 13810 (-)
Type: TC
Location: 13298 - 13810 (-)
Gene ID: k141_27592_13
Type: STP
Location: 14091 - 14852 (-)
Type: STP
Location: 14091 - 14852 (-)
Gene ID: k141_27592_14
Type: TC
Location: 15474 - 17732 (-)
Type: TC
Location: 15474 - 17732 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.