Cluster: SW054_bin.78_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: SW054_bin.78
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_56030 | k141_56030_6 | 4234 | 4677 | + | 4.A.6.1.16 |
| pfam | k141_56030 | k141_56030_7 | 4677 | 4958 | + | YajC |
| TC | k141_56030 | k141_56030_8 | 4995 | 5477 | + | 4.A.6.1.4 |
| TC | k141_56030 | k141_56030_9 | 5568 | 6368 | + | 4.A.6.1.4 |
| TC | k141_56030 | k141_56030_10 | 6358 | 7440 | + | 4.A.6.1.4 |
| TF | k141_56030 | k141_56030_11 | 7625 | 8356 | + | GntR |
| STP | k141_56030 | k141_56030_12 | 8471 | 9637 | + | SIS | SIS |
| CAZyme | k141_56030 | k141_56030_13 | 9755 | 10924 | + | CE9 |
Gene ID: k141_56030_6
Type: TC
Location: 4234 - 4677 (+)
Type: TC
Location: 4234 - 4677 (+)
Gene ID: k141_56030_7
Type: pfam
Location: 4677 - 4958 (+)
Type: pfam
Location: 4677 - 4958 (+)
Gene ID: k141_56030_8
Type: TC
Location: 4995 - 5477 (+)
Type: TC
Location: 4995 - 5477 (+)
Gene ID: k141_56030_9
Type: TC
Location: 5568 - 6368 (+)
Type: TC
Location: 5568 - 6368 (+)
Gene ID: k141_56030_10
Type: TC
Location: 6358 - 7440 (+)
Type: TC
Location: 6358 - 7440 (+)
Gene ID: k141_56030_11
Type: TF
Location: 7625 - 8356 (+)
Type: TF
Location: 7625 - 8356 (+)
Gene ID: k141_56030_12
Type: STP
Location: 8471 - 9637 (+)
Type: STP
Location: 8471 - 9637 (+)
Gene ID: k141_56030_13
Type: CAZyme
Location: 9755 - 10924 (+)
Type: CAZyme
Location: 9755 - 10924 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.