Cluster: SW054_bin.78_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: SW054_bin.78
- CGC Family ID: CGCFAM_00467
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_116052 | k141_116052_19 | 19287 | 20663 | - | GH13_20 |
| TC | k141_116052 | k141_116052_20 | 20817 | 22013 | - | 2.A.1.2.18 |
| TC | k141_116052 | k141_116052_21 | 22135 | 24495 | - | 9.A.8.1.6 |
| pfam | k141_116052 | k141_116052_22 | 25107 | 26288 | + | Zn_Ribbon_1 |
| peptidase | k141_116052 | k141_116052_23 | 26712 | 27611 | - | S09.UPW |
| TC | k141_116052 | k141_116052_24 | 27858 | 28226 | + | 2.A.2.2.1 |
Gene ID: k141_116052_19
Type: CAZyme
Location: 19287 - 20663 (-)
Type: CAZyme
Location: 19287 - 20663 (-)
Gene ID: k141_116052_20
Type: TC
Location: 20817 - 22013 (-)
Type: TC
Location: 20817 - 22013 (-)
Gene ID: k141_116052_21
Type: TC
Location: 22135 - 24495 (-)
Type: TC
Location: 22135 - 24495 (-)
Gene ID: k141_116052_22
Type: pfam
Location: 25107 - 26288 (+)
Type: pfam
Location: 25107 - 26288 (+)
Gene ID: k141_116052_23
Type: peptidase
Location: 26712 - 27611 (-)
Type: peptidase
Location: 26712 - 27611 (-)
Gene ID: k141_116052_24
Type: TC
Location: 27858 - 28226 (+)
Type: TC
Location: 27858 - 28226 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_116052_22 | vegetarian > vegan | 17.25432 | 0.01332 |