Cluster: SW054_bin.33_CGC9
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: SW054_bin.33
- CGC Family ID: CGCFAM_02865
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_30401 | k141_30401_7 | 5691 | 7013 | + | 2.A.66.1.28 |
| pfam | k141_30401 | k141_30401_8 | 7038 | 7988 | + | EamA | EamA |
| TC | k141_30401 | k141_30401_9 | 8116 | 9447 | + | 3.A.5.1.1 |
| CAZyme | k141_30401 | k141_30401_10 | 9520 | 10782 | - | GH171 |
| STP | k141_30401 | k141_30401_11 | 10839 | 11375 | + | HD |
| TC | k141_30401 | k141_30401_12 | 11465 | 14206 | + | 1.B.42.1.8 |
| pfam | k141_30401 | k141_30401_13 | 14293 | 14955 | - | UDG |
| pfam | k141_30401 | k141_30401_14 | 14976 | 16016 | - | AsnA |
| TC | k141_30401 | k141_30401_15 | 16406 | 17152 | + | 9.B.158.1.1 |
| pfam | k141_30401 | k141_30401_16 | 17256 | 19886 | - | Transglut_core |
| CAZyme | k141_30401 | k141_30401_17 | 20237 | 22786 | + | GH2 |
| CAZyme | k141_30401 | k141_30401_18 | 22841 | 25177 | + | GH20 |
| CAZyme | k141_30401 | k141_30401_19 | 25183 | 27249 | + | GH20 |
| CAZyme | k141_30401 | k141_30401_20 | 27261 | 29495 | + | GH92 |
| CAZyme | k141_30401 | k141_30401_21 | 29631 | 31625 | + | GH97 |
| CAZyme | k141_30401 | k141_30401_22 | 31835 | 33409 | - | GH5_22 | GH5_28 |
| CAZyme | k141_30401 | k141_30401_23 | 33542 | 35173 | + | GH33 |
Gene ID: k141_30401_7
Type: TC
Location: 5691 - 7013 (+)
Type: TC
Location: 5691 - 7013 (+)
Gene ID: k141_30401_8
Type: pfam
Location: 7038 - 7988 (+)
Type: pfam
Location: 7038 - 7988 (+)
Gene ID: k141_30401_9
Type: TC
Location: 8116 - 9447 (+)
Type: TC
Location: 8116 - 9447 (+)
Gene ID: k141_30401_10
Type: CAZyme
Location: 9520 - 10782 (-)
Type: CAZyme
Location: 9520 - 10782 (-)
Gene ID: k141_30401_11
Type: STP
Location: 10839 - 11375 (+)
Type: STP
Location: 10839 - 11375 (+)
Gene ID: k141_30401_12
Type: TC
Location: 11465 - 14206 (+)
Type: TC
Location: 11465 - 14206 (+)
Gene ID: k141_30401_13
Type: pfam
Location: 14293 - 14955 (-)
Type: pfam
Location: 14293 - 14955 (-)
Gene ID: k141_30401_14
Type: pfam
Location: 14976 - 16016 (-)
Type: pfam
Location: 14976 - 16016 (-)
Gene ID: k141_30401_15
Type: TC
Location: 16406 - 17152 (+)
Type: TC
Location: 16406 - 17152 (+)
Gene ID: k141_30401_16
Type: pfam
Location: 17256 - 19886 (-)
Type: pfam
Location: 17256 - 19886 (-)
Gene ID: k141_30401_17
Type: CAZyme
Location: 20237 - 22786 (+)
Type: CAZyme
Location: 20237 - 22786 (+)
Gene ID: k141_30401_18
Type: CAZyme
Location: 22841 - 25177 (+)
Type: CAZyme
Location: 22841 - 25177 (+)
Gene ID: k141_30401_19
Type: CAZyme
Location: 25183 - 27249 (+)
Type: CAZyme
Location: 25183 - 27249 (+)
Gene ID: k141_30401_20
Type: CAZyme
Location: 27261 - 29495 (+)
Type: CAZyme
Location: 27261 - 29495 (+)
Gene ID: k141_30401_21
Type: CAZyme
Location: 29631 - 31625 (+)
Type: CAZyme
Location: 29631 - 31625 (+)
Gene ID: k141_30401_22
Type: CAZyme
Location: 31835 - 33409 (-)
Type: CAZyme
Location: 31835 - 33409 (-)
Gene ID: k141_30401_23
Type: CAZyme
Location: 33542 - 35173 (+)
Type: CAZyme
Location: 33542 - 35173 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprophilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.