Cluster: SW048_bin.2_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: SW048_bin.2
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_79478 | k141_79478_23 | 28472 | 29641 | - | CE9 |
| STP | k141_79478 | k141_79478_24 | 29760 | 30926 | - | SIS | SIS |
| TF | k141_79478 | k141_79478_25 | 31041 | 31772 | - | GntR |
| TC | k141_79478 | k141_79478_26 | 31958 | 33040 | - | 4.A.6.1.4 |
| TC | k141_79478 | k141_79478_27 | 33030 | 33830 | - | 4.A.6.1.4 |
| TC | k141_79478 | k141_79478_28 | 33921 | 34403 | - | 4.A.6.1.4 |
| pfam | k141_79478 | k141_79478_29 | 34440 | 34721 | - | YajC |
| TC | k141_79478 | k141_79478_30 | 34721 | 35164 | - | 4.A.6.1.16 |
Gene ID: k141_79478_23
Type: CAZyme
Location: 28472 - 29641 (-)
Type: CAZyme
Location: 28472 - 29641 (-)
Gene ID: k141_79478_24
Type: STP
Location: 29760 - 30926 (-)
Type: STP
Location: 29760 - 30926 (-)
Gene ID: k141_79478_25
Type: TF
Location: 31041 - 31772 (-)
Type: TF
Location: 31041 - 31772 (-)
Gene ID: k141_79478_26
Type: TC
Location: 31958 - 33040 (-)
Type: TC
Location: 31958 - 33040 (-)
Gene ID: k141_79478_27
Type: TC
Location: 33030 - 33830 (-)
Type: TC
Location: 33030 - 33830 (-)
Gene ID: k141_79478_28
Type: TC
Location: 33921 - 34403 (-)
Type: TC
Location: 33921 - 34403 (-)
Gene ID: k141_79478_29
Type: pfam
Location: 34440 - 34721 (-)
Type: pfam
Location: 34440 - 34721 (-)
Gene ID: k141_79478_30
Type: TC
Location: 34721 - 35164 (-)
Type: TC
Location: 34721 - 35164 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_79478_29 | vegan > omnivore | 1.01323 | 0.00566 |