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Cluster: SW048_bin.2_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_79478 k141_79478_1 373 711 - 4.A.3.1.2
TF k141_79478 k141_79478_2 926 1930 - LacI
TC k141_79478 k141_79478_3 2288 4063 + 4.A.3.1.1
CAZyme k141_79478 k141_79478_4 4130 5569 + GH1
TF k141_79478 k141_79478_5 5831 6868 - LacI
CAZyme k141_79478 k141_79478_6 7210 8652 + GH1
TC k141_79478 k141_79478_7 8829 10589 + 4.A.3.1.1
TF k141_79478 k141_79478_8 10924 11925 - LacI
TC k141_79478 k141_79478_9 12210 13988 + 4.A.3.1.1
CAZyme k141_79478 k141_79478_10 14064 15485 + GH1
pfam k141_79478 k141_79478_11 15852 17084 + Fic
STP k141_79478 k141_79478_12 17133 17462 - DeoRC
TC k141_79478 k141_79478_13 17625 19319 - 4.A.3.1.1
Gene ID: k141_79478_1
Type: TC
Location: 373 - 711 (-)
Gene ID: k141_79478_2
Type: TF
Location: 926 - 1930 (-)
Gene ID: k141_79478_3
Type: TC
Location: 2288 - 4063 (+)
Gene ID: k141_79478_4
Type: CAZyme
Location: 4130 - 5569 (+)
Gene ID: k141_79478_5
Type: TF
Location: 5831 - 6868 (-)
Gene ID: k141_79478_6
Type: CAZyme
Location: 7210 - 8652 (+)
Gene ID: k141_79478_7
Type: TC
Location: 8829 - 10589 (+)
Gene ID: k141_79478_8
Type: TF
Location: 10924 - 11925 (-)
Gene ID: k141_79478_9
Type: TC
Location: 12210 - 13988 (+)
Gene ID: k141_79478_10
Type: CAZyme
Location: 14064 - 15485 (+)
Gene ID: k141_79478_11
Type: pfam
Location: 15852 - 17084 (+)
Gene ID: k141_79478_12
Type: STP
Location: 17133 - 17462 (-)
Gene ID: k141_79478_13
Type: TC
Location: 17625 - 19319 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_79478_5 vegetarian > omnivore 1.07619 0.01548
k141_79478_12 vegetarian > omnivore 1.00094 0.02517

🧭 Explore Read Mapping of CGC

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