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Cluster: SW048_14_sub_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_92450 k141_92450_5 2983 4218 + 3.B.1.1.2
pfam k141_92450 k141_92450_6 4305 5579 - OEP | OEP
TC k141_92450 k141_92450_7 5614 8643 - 2.A.6.2.37
TC k141_92450 k141_92450_8 8693 9736 - 3.A.1.122.1
CAZyme k141_92450 k141_92450_9 9911 12226 - GH65
TC k141_92450 k141_92450_10 12551 13924 - 2.A.2.6.2
TF k141_92450 k141_92450_11 13944 14948 - LacI
CAZyme k141_92450 k141_92450_12 15164 16339 + GH53
TC k141_92450 k141_92450_13 17263 20295 + 1.B.14.6.1
TC k141_92450 k141_92450_14 20317 21993 + 8.A.46.1.1
pfam k141_92450 k141_92450_15 22032 23204 + SusE | SusF_SusE
pfam k141_92450 k141_92450_16 23240 24694 + SusF_SusE | SusF_N
CAZyme k141_92450 k141_92450_17 24795 25895 + GH53
CAZyme k141_92450 k141_92450_18 26195 27802 + GH13_36
Gene ID: k141_92450_5
Type: TC
Location: 2983 - 4218 (+)
Gene ID: k141_92450_6
Type: pfam
Location: 4305 - 5579 (-)
Gene ID: k141_92450_7
Type: TC
Location: 5614 - 8643 (-)
Gene ID: k141_92450_8
Type: TC
Location: 8693 - 9736 (-)
Gene ID: k141_92450_9
Type: CAZyme
Location: 9911 - 12226 (-)
Gene ID: k141_92450_10
Type: TC
Location: 12551 - 13924 (-)
Gene ID: k141_92450_11
Type: TF
Location: 13944 - 14948 (-)
Gene ID: k141_92450_12
Type: CAZyme
Location: 15164 - 16339 (+)
Gene ID: k141_92450_13
Type: TC
Location: 17263 - 20295 (+)
Gene ID: k141_92450_14
Type: TC
Location: 20317 - 21993 (+)
Gene ID: k141_92450_15
Type: pfam
Location: 22032 - 23204 (+)
Gene ID: k141_92450_16
Type: pfam
Location: 23240 - 24694 (+)
Gene ID: k141_92450_17
Type: CAZyme
Location: 24795 - 25895 (+)
Gene ID: k141_92450_18
Type: CAZyme
Location: 26195 - 27802 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_92450_14 vegetarian > omnivore 2.05383 0.03315

🧭 Explore Read Mapping of CGC

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