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Cluster: SW028_35_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_316878 k141_316878_25 30337 32955 - 3.A.3.5.15
pfam k141_316878 k141_316878_26 33002 33364 - Trns_repr_metal
NULL(UNKNOWN) k141_316878 k141_316878_27 33453 34499 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_316878 k141_316878_28 35068 35751 + 2.A.115.2.3
TF k141_316878 k141_316878_29 35846 36709 + HTH_AraC | HTH_AraC
TC k141_316878 k141_316878_30 36807 37127 + 4.A.3.2.2
pfam k141_316878 k141_316878_31 37264 37725 + LacAB_rpiB
CAZyme k141_316878 k141_316878_32 37887 38897 - GH177
pfam k141_316878 k141_316878_33 38968 39804 - AP_endonuc_2
TF k141_316878 k141_316878_34 39984 40889 - HTH_AraC | HTH_AraC
TC k141_316878 k141_316878_35 41050 42459 - 2.A.1.1.26
CAZyme k141_316878 k141_316878_36 42943 43968 + GH177
Gene ID: k141_316878_25
Type: TC
Location: 30337 - 32955 (-)
Gene ID: k141_316878_26
Type: pfam
Location: 33002 - 33364 (-)
Gene ID: k141_316878_27
Type:
Location: 33453 - 34499 (-)
Gene ID: k141_316878_28
Type: TC
Location: 35068 - 35751 (+)
Gene ID: k141_316878_29
Type: TF
Location: 35846 - 36709 (+)
Gene ID: k141_316878_30
Type: TC
Location: 36807 - 37127 (+)
Gene ID: k141_316878_31
Type: pfam
Location: 37264 - 37725 (+)
Gene ID: k141_316878_32
Type: CAZyme
Location: 37887 - 38897 (-)
Gene ID: k141_316878_33
Type: pfam
Location: 38968 - 39804 (-)
Gene ID: k141_316878_34
Type: TF
Location: 39984 - 40889 (-)
Gene ID: k141_316878_35
Type: TC
Location: 41050 - 42459 (-)
Gene ID: k141_316878_36
Type: CAZyme
Location: 42943 - 43968 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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