Cluster: SW025_103_sub_CGC20
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: SW025_103_sub
- CGC Family ID: CGCFAM_00019
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_133764 | k141_133764_7 | 5675 | 8014 | - | 3.A.3.5.15 |
| STP | k141_133764 | k141_133764_8 | 8428 | 10512 | - | Pkinase |
| STP | k141_133764 | k141_133764_9 | 10684 | 11646 | - | FHA |
| TC | k141_133764 | k141_133764_10 | 12146 | 14395 | + | 1.I.1.1.3 |
| pfam | k141_133764 | k141_133764_11 | 14735 | 15952 | - | rve | HTH_21 | rve_2 |
| STP | k141_133764 | k141_133764_12 | 16319 | 17080 | + | Fer4 |
| TC | k141_133764 | k141_133764_13 | 17361 | 17873 | + | 4.A.1.2.11 |
| pfam | k141_133764 | k141_133764_14 | 17892 | 18746 | + | PRD | PRD | CAT_RBD |
| TC | k141_133764 | k141_133764_15 | 18846 | 20462 | + | 4.A.1.1.3 |
| CAZyme | k141_133764 | k141_133764_16 | 20466 | 21848 | + | GH4 |
| STP | k141_133764 | k141_133764_17 | 22105 | 23937 | + | Pyr_redox_2 |
| TC | k141_133764 | k141_133764_18 | 23931 | 25742 | + | 3.D.1.5.1 |
| NULL(UNKNOWN) | k141_133764 | k141_133764_19 | 25745 | 26800 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_133764 | k141_133764_20 | 26804 | 28180 | + | 3.A.1.17.10 |
Gene ID: k141_133764_7
Type: TC
Location: 5675 - 8014 (-)
Type: TC
Location: 5675 - 8014 (-)
Gene ID: k141_133764_8
Type: STP
Location: 8428 - 10512 (-)
Type: STP
Location: 8428 - 10512 (-)
Gene ID: k141_133764_9
Type: STP
Location: 10684 - 11646 (-)
Type: STP
Location: 10684 - 11646 (-)
Gene ID: k141_133764_10
Type: TC
Location: 12146 - 14395 (+)
Type: TC
Location: 12146 - 14395 (+)
Gene ID: k141_133764_11
Type: pfam
Location: 14735 - 15952 (-)
Type: pfam
Location: 14735 - 15952 (-)
Gene ID: k141_133764_12
Type: STP
Location: 16319 - 17080 (+)
Type: STP
Location: 16319 - 17080 (+)
Gene ID: k141_133764_13
Type: TC
Location: 17361 - 17873 (+)
Type: TC
Location: 17361 - 17873 (+)
Gene ID: k141_133764_14
Type: pfam
Location: 17892 - 18746 (+)
Type: pfam
Location: 17892 - 18746 (+)
Gene ID: k141_133764_15
Type: TC
Location: 18846 - 20462 (+)
Type: TC
Location: 18846 - 20462 (+)
Gene ID: k141_133764_16
Type: CAZyme
Location: 20466 - 21848 (+)
Type: CAZyme
Location: 20466 - 21848 (+)
Gene ID: k141_133764_17
Type: STP
Location: 22105 - 23937 (+)
Type: STP
Location: 22105 - 23937 (+)
Gene ID: k141_133764_18
Type: TC
Location: 23931 - 25742 (+)
Type: TC
Location: 23931 - 25742 (+)
Gene ID: k141_133764_19
Type:
Location: 25745 - 26800 (+)
Type:
Location: 25745 - 26800 (+)
Gene ID: k141_133764_20
Type: TC
Location: 26804 - 28180 (+)
Type: TC
Location: 26804 - 28180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.