Cluster: SW025_103_sub_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: SW025_103_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_68219 | k141_68219_7 | 4530 | 7298 | - | 3.A.3.4.1 |
| STP | k141_68219 | k141_68219_8 | 7735 | 8418 | + | Pribosyltran |
| TF | k141_68219 | k141_68219_9 | 8769 | 9623 | - | HTH_6 |
| CAZyme | k141_68219 | k141_68219_10 | 9666 | 12233 | - | GH106 |
| TF | k141_68219 | k141_68219_11 | 12350 | 13357 | + | HTH_AraC |
| CAZyme | k141_68219 | k141_68219_12 | 13558 | 15006 | + | GH1 |
| pfam | k141_68219 | k141_68219_13 | 15237 | 16016 | + | Hydrolase_3 |
| TC | k141_68219 | k141_68219_14 | 16221 | 16757 | + | 4.A.1.2.6 |
Gene ID: k141_68219_7
Type: TC
Location: 4530 - 7298 (-)
Type: TC
Location: 4530 - 7298 (-)
Gene ID: k141_68219_8
Type: STP
Location: 7735 - 8418 (+)
Type: STP
Location: 7735 - 8418 (+)
Gene ID: k141_68219_9
Type: TF
Location: 8769 - 9623 (-)
Type: TF
Location: 8769 - 9623 (-)
Gene ID: k141_68219_10
Type: CAZyme
Location: 9666 - 12233 (-)
Type: CAZyme
Location: 9666 - 12233 (-)
Gene ID: k141_68219_11
Type: TF
Location: 12350 - 13357 (+)
Type: TF
Location: 12350 - 13357 (+)
Gene ID: k141_68219_12
Type: CAZyme
Location: 13558 - 15006 (+)
Type: CAZyme
Location: 13558 - 15006 (+)
Gene ID: k141_68219_13
Type: pfam
Location: 15237 - 16016 (+)
Type: pfam
Location: 15237 - 16016 (+)
Gene ID: k141_68219_14
Type: TC
Location: 16221 - 16757 (+)
Type: TC
Location: 16221 - 16757 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.