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Cluster: SW025_103_sub_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_127666 k141_127666_23 20316 22010 + 4.A.3.1.1
STP k141_127666 k141_127666_24 22173 22502 + DeoRC
pfam k141_127666 k141_127666_25 22551 23783 - Fic
CAZyme k141_127666 k141_127666_26 24150 25571 - GH1
TC k141_127666 k141_127666_27 25647 27404 - 4.A.3.1.1
TF k141_127666 k141_127666_28 27680 28690 + LacI
TC k141_127666 k141_127666_29 28865 30625 - 4.A.3.1.1
CAZyme k141_127666 k141_127666_30 30802 32244 - GH1
TF k141_127666 k141_127666_31 32586 33623 + LacI
CAZyme k141_127666 k141_127666_32 33885 35324 - GH1
TC k141_127666 k141_127666_33 35391 37166 - 4.A.3.1.1
TF k141_127666 k141_127666_34 37524 38528 + LacI
TC k141_127666 k141_127666_35 38742 39080 + 4.A.3.1.2
Gene ID: k141_127666_23
Type: TC
Location: 20316 - 22010 (+)
Gene ID: k141_127666_24
Type: STP
Location: 22173 - 22502 (+)
Gene ID: k141_127666_25
Type: pfam
Location: 22551 - 23783 (-)
Gene ID: k141_127666_26
Type: CAZyme
Location: 24150 - 25571 (-)
Gene ID: k141_127666_27
Type: TC
Location: 25647 - 27404 (-)
Gene ID: k141_127666_28
Type: TF
Location: 27680 - 28690 (+)
Gene ID: k141_127666_29
Type: TC
Location: 28865 - 30625 (-)
Gene ID: k141_127666_30
Type: CAZyme
Location: 30802 - 32244 (-)
Gene ID: k141_127666_31
Type: TF
Location: 32586 - 33623 (+)
Gene ID: k141_127666_32
Type: CAZyme
Location: 33885 - 35324 (-)
Gene ID: k141_127666_33
Type: TC
Location: 35391 - 37166 (-)
Gene ID: k141_127666_34
Type: TF
Location: 37524 - 38528 (+)
Gene ID: k141_127666_35
Type: TC
Location: 38742 - 39080 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_127666_31 vegetarian > omnivore 1.00418 0.01560

🧭 Explore Read Mapping of CGC

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