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Cluster: SW014_11_sub_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_42811 k141_42811_44 48769 50265 + GH77
pfam k141_42811 k141_42811_45 50312 50857 - Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10
TF k141_42811 k141_42811_46 51027 51794 + HTH_AraC
CAZyme k141_42811 k141_42811_47 51922 54180 + GH106
CAZyme k141_42811 k141_42811_48 54274 56979 + CBM67 | GH78
TC k141_42811 k141_42811_49 56976 58499 + 3.A.1.2.20
TC k141_42811 k141_42811_50 58486 59463 + 3.A.1.2.15
NULL(UNKNOWN) k141_42811 k141_42811_51 59511 59636 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_42811 k141_42811_52 59698 60561 + 3.A.1.2.1
TF k141_42811 k141_42811_53 60575 61609 + LacI
TC k141_42811 k141_42811_54 61789 62970 + 2.A.36.2.1
Gene ID: k141_42811_44
Type: CAZyme
Location: 48769 - 50265 (+)
Gene ID: k141_42811_45
Type: pfam
Location: 50312 - 50857 (-)
Gene ID: k141_42811_46
Type: TF
Location: 51027 - 51794 (+)
Gene ID: k141_42811_47
Type: CAZyme
Location: 51922 - 54180 (+)
Gene ID: k141_42811_48
Type: CAZyme
Location: 54274 - 56979 (+)
Gene ID: k141_42811_49
Type: TC
Location: 56976 - 58499 (+)
Gene ID: k141_42811_50
Type: TC
Location: 58486 - 59463 (+)
Gene ID: k141_42811_51
Type:
Location: 59511 - 59636 (+)
Gene ID: k141_42811_52
Type: TC
Location: 59698 - 60561 (+)
Gene ID: k141_42811_53
Type: TF
Location: 60575 - 61609 (+)
Gene ID: k141_42811_54
Type: TC
Location: 61789 - 62970 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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