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Cluster: SW014_11_sub_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_14154 k141_14154_1 236 1336 + 3.A.1.20.1
TC k141_14154 k141_14154_2 1333 2997 + 3.A.1.20.1
TC k141_14154 k141_14154_3 3122 4849 + 8.A.59.2.1
TF k141_14154 k141_14154_4 4842 5639 + HTH_AraC | HTH_AraC
pfam k141_14154 k141_14154_5 5660 6433 - SUFU
TC k141_14154 k141_14154_6 6485 7630 - 9.B.34.1.1
TF k141_14154 k141_14154_7 7752 8579 - MerR
TC k141_14154 k141_14154_8 8698 10026 + 2.A.66.1.37
TF k141_14154 k141_14154_9 10098 10874 - HTH_AraC | HTH_AraC
TC k141_14154 k141_14154_10 10937 12631 - 8.A.59.2.1
TC k141_14154 k141_14154_11 12628 13650 - 3.A.1.20.1
TC k141_14154 k141_14154_12 13800 14876 - 3.A.1.20.2
TC k141_14154 k141_14154_13 14892 16604 - 3.A.1.20.2
TC k141_14154 k141_14154_14 16745 17941 - 3.A.1.20.3
TC k141_14154 k141_14154_15 18072 19379 - 2.A.66.1.7
TF k141_14154 k141_14154_16 19520 20311 + MerR
TC k141_14154 k141_14154_17 20497 22227 + 3.A.1.135.7
TC k141_14154 k141_14154_18 22224 23981 + 3.A.1.135.7
pfam k141_14154 k141_14154_19 23993 25159 - PMI_typeI_cat | MPI_cupin_dom
CAZyme k141_14154 k141_14154_20 25170 26552 - GH1
pfam k141_14154 k141_14154_21 26571 27476 - ROK
CAZyme k141_14154 k141_14154_22 27473 29566 - GH42
TF k141_14154 k141_14154_23 29660 31261 - HTH_AraC | HTH_AraC
TC k141_14154 k141_14154_24 31291 33048 - 8.A.59.2.1
TC k141_14154 k141_14154_25 33180 34013 - 3.A.1.1.47
TC k141_14154 k141_14154_26 34010 34894 - 3.A.1.1.34
TC k141_14154 k141_14154_27 34910 36214 - 3.A.1.1.28
TC k141_14154 k141_14154_28 36539 37903 - 2.A.40.2.1
Gene ID: k141_14154_1
Type: TC
Location: 236 - 1336 (+)
Gene ID: k141_14154_2
Type: TC
Location: 1333 - 2997 (+)
Gene ID: k141_14154_3
Type: TC
Location: 3122 - 4849 (+)
Gene ID: k141_14154_4
Type: TF
Location: 4842 - 5639 (+)
Gene ID: k141_14154_5
Type: pfam
Location: 5660 - 6433 (-)
Gene ID: k141_14154_6
Type: TC
Location: 6485 - 7630 (-)
Gene ID: k141_14154_7
Type: TF
Location: 7752 - 8579 (-)
Gene ID: k141_14154_8
Type: TC
Location: 8698 - 10026 (+)
Gene ID: k141_14154_9
Type: TF
Location: 10098 - 10874 (-)
Gene ID: k141_14154_10
Type: TC
Location: 10937 - 12631 (-)
Gene ID: k141_14154_11
Type: TC
Location: 12628 - 13650 (-)
Gene ID: k141_14154_12
Type: TC
Location: 13800 - 14876 (-)
Gene ID: k141_14154_13
Type: TC
Location: 14892 - 16604 (-)
Gene ID: k141_14154_14
Type: TC
Location: 16745 - 17941 (-)
Gene ID: k141_14154_15
Type: TC
Location: 18072 - 19379 (-)
Gene ID: k141_14154_16
Type: TF
Location: 19520 - 20311 (+)
Gene ID: k141_14154_17
Type: TC
Location: 20497 - 22227 (+)
Gene ID: k141_14154_18
Type: TC
Location: 22224 - 23981 (+)
Gene ID: k141_14154_19
Type: pfam
Location: 23993 - 25159 (-)
Gene ID: k141_14154_20
Type: CAZyme
Location: 25170 - 26552 (-)
Gene ID: k141_14154_21
Type: pfam
Location: 26571 - 27476 (-)
Gene ID: k141_14154_22
Type: CAZyme
Location: 27473 - 29566 (-)
Gene ID: k141_14154_23
Type: TF
Location: 29660 - 31261 (-)
Gene ID: k141_14154_24
Type: TC
Location: 31291 - 33048 (-)
Gene ID: k141_14154_25
Type: TC
Location: 33180 - 34013 (-)
Gene ID: k141_14154_26
Type: TC
Location: 34010 - 34894 (-)
Gene ID: k141_14154_27
Type: TC
Location: 34910 - 36214 (-)
Gene ID: k141_14154_28
Type: TC
Location: 36539 - 37903 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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