Cluster: SW011_bin.38_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: SW011_bin.38
- CGC Family ID: CGCFAM_00182
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_93629 | k141_93629_46 | 56154 | 57398 | - | GT4 |
| pfam | k141_93629 | k141_93629_47 | 57414 | 58178 | - | BcrAD_BadFG |
| pfam | k141_93629 | k141_93629_48 | 58230 | 59393 | - | HGD-D |
| TC | k141_93629 | k141_93629_49 | 59471 | 60256 | - | 3.A.1.5.36 |
| TC | k141_93629 | k141_93629_50 | 60243 | 61241 | - | 3.A.1.5.35 |
| TC | k141_93629 | k141_93629_51 | 61245 | 62072 | - | 3.A.1.5.39 |
| TC | k141_93629 | k141_93629_52 | 62072 | 63025 | - | 3.A.1.5.11 |
| TC | k141_93629 | k141_93629_53 | 63112 | 64722 | - | 3.A.1.5.11 |
| pfam | k141_93629 | k141_93629_54 | 64907 | 66001 | - | HGD-D |
| NULL(UNKNOWN) | k141_93629 | k141_93629_55 | 66011 | 66190 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_93629 | k141_93629_56 | 66641 | 67711 | - | 3.A.1.1.3 |
| TC | k141_93629 | k141_93629_57 | 67715 | 69196 | - | 3.A.1.8.1 |
Gene ID: k141_93629_46
Type: CAZyme
Location: 56154 - 57398 (-)
Type: CAZyme
Location: 56154 - 57398 (-)
Gene ID: k141_93629_47
Type: pfam
Location: 57414 - 58178 (-)
Type: pfam
Location: 57414 - 58178 (-)
Gene ID: k141_93629_48
Type: pfam
Location: 58230 - 59393 (-)
Type: pfam
Location: 58230 - 59393 (-)
Gene ID: k141_93629_49
Type: TC
Location: 59471 - 60256 (-)
Type: TC
Location: 59471 - 60256 (-)
Gene ID: k141_93629_50
Type: TC
Location: 60243 - 61241 (-)
Type: TC
Location: 60243 - 61241 (-)
Gene ID: k141_93629_51
Type: TC
Location: 61245 - 62072 (-)
Type: TC
Location: 61245 - 62072 (-)
Gene ID: k141_93629_52
Type: TC
Location: 62072 - 63025 (-)
Type: TC
Location: 62072 - 63025 (-)
Gene ID: k141_93629_53
Type: TC
Location: 63112 - 64722 (-)
Type: TC
Location: 63112 - 64722 (-)
Gene ID: k141_93629_54
Type: pfam
Location: 64907 - 66001 (-)
Type: pfam
Location: 64907 - 66001 (-)
Gene ID: k141_93629_55
Type:
Location: 66011 - 66190 (-)
Type:
Location: 66011 - 66190 (-)
Gene ID: k141_93629_56
Type: TC
Location: 66641 - 67711 (-)
Type: TC
Location: 66641 - 67711 (-)
Gene ID: k141_93629_57
Type: TC
Location: 67715 - 69196 (-)
Type: TC
Location: 67715 - 69196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_93629_49 | vegan > omnivore | 2.47463 | 0.01287 |
| k141_93629_50 | vegan > omnivore | 1.13396 | 0.01287 |
| k141_93629_51 | vegan > omnivore | 2.69073 | 0.01287 |
| k141_93629_52 | vegan > omnivore | 2.48458 | 0.01287 |
| k141_93629_53 | vegan > omnivore | 3.17696 | 0.01287 |