Cluster: SW011_bin.38_CGC18
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: SW011_bin.38
- CGC Family ID: CGCFAM_00024
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_80219 | k141_80219_11 | 15655 | 17031 | - | GH13_20 |
| TC | k141_80219 | k141_80219_12 | 17185 | 18381 | - | 2.A.1.2.18 |
| pfam | k141_80219 | k141_80219_13 | 18485 | 18967 | - | tRNA_edit |
| TC | k141_80219 | k141_80219_14 | 19062 | 21029 | - | 9.A.8.1.6 |
| TC | k141_80219 | k141_80219_15 | 21014 | 21418 | - | 9.A.8.1.6 |
| pfam | k141_80219 | k141_80219_16 | 21782 | 23008 | + | Zn_Ribbon_1 |
| peptidase | k141_80219 | k141_80219_17 | 23245 | 24144 | - | S09.UPW |
| TC | k141_80219 | k141_80219_18 | 24391 | 24954 | + | 4.A.1.2.6 |
| TC | k141_80219 | k141_80219_19 | 25190 | 27124 | + | 9.B.97.5.1 |
| pfam | k141_80219 | k141_80219_20 | 27260 | 28663 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | k141_80219 | k141_80219_21 | 28913 | 29701 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_80219 | k141_80219_22 | 29860 | 30840 | + | 3.A.1.34.1 |
| TC | k141_80219 | k141_80219_23 | 31045 | 31968 | + | 3.A.1.34.1 |
| TC | k141_80219 | k141_80219_24 | 31961 | 32755 | + | 3.A.1.34.1 |
| pfam | k141_80219 | k141_80219_25 | 32828 | 34858 | + | Metallophos | 5_nucleotid_C |
| TC | k141_80219 | k141_80219_26 | 34988 | 35755 | + | 1.A.23.4.10 |
Gene ID: k141_80219_11
Type: CAZyme
Location: 15655 - 17031 (-)
Type: CAZyme
Location: 15655 - 17031 (-)
Gene ID: k141_80219_12
Type: TC
Location: 17185 - 18381 (-)
Type: TC
Location: 17185 - 18381 (-)
Gene ID: k141_80219_13
Type: pfam
Location: 18485 - 18967 (-)
Type: pfam
Location: 18485 - 18967 (-)
Gene ID: k141_80219_14
Type: TC
Location: 19062 - 21029 (-)
Type: TC
Location: 19062 - 21029 (-)
Gene ID: k141_80219_15
Type: TC
Location: 21014 - 21418 (-)
Type: TC
Location: 21014 - 21418 (-)
Gene ID: k141_80219_16
Type: pfam
Location: 21782 - 23008 (+)
Type: pfam
Location: 21782 - 23008 (+)
Gene ID: k141_80219_17
Type: peptidase
Location: 23245 - 24144 (-)
Type: peptidase
Location: 23245 - 24144 (-)
Gene ID: k141_80219_18
Type: TC
Location: 24391 - 24954 (+)
Type: TC
Location: 24391 - 24954 (+)
Gene ID: k141_80219_19
Type: TC
Location: 25190 - 27124 (+)
Type: TC
Location: 25190 - 27124 (+)
Gene ID: k141_80219_20
Type: pfam
Location: 27260 - 28663 (+)
Type: pfam
Location: 27260 - 28663 (+)
Gene ID: k141_80219_21
Type:
Location: 28913 - 29701 (+)
Type:
Location: 28913 - 29701 (+)
Gene ID: k141_80219_22
Type: TC
Location: 29860 - 30840 (+)
Type: TC
Location: 29860 - 30840 (+)
Gene ID: k141_80219_23
Type: TC
Location: 31045 - 31968 (+)
Type: TC
Location: 31045 - 31968 (+)
Gene ID: k141_80219_24
Type: TC
Location: 31961 - 32755 (+)
Type: TC
Location: 31961 - 32755 (+)
Gene ID: k141_80219_25
Type: pfam
Location: 32828 - 34858 (+)
Type: pfam
Location: 32828 - 34858 (+)
Gene ID: k141_80219_26
Type: TC
Location: 34988 - 35755 (+)
Type: TC
Location: 34988 - 35755 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_80219_16 | vegetarian > vegan | 6.52752 | 0.03217 |
| k141_80219_19 | vegan > omnivore | 1.22176 | 0.01287 |
| k141_80219_19 | vegetarian > omnivore | 1.42753 | 0.03481 |
| k141_80219_25 | vegan > omnivore | 1.74187 | 0.01287 |
| k141_80219_25 | vegetarian > omnivore | 1.37044 | 0.02258 |