Cluster: SW004_maxbin.007_sub_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: SW004_maxbin.007_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_123449 | k141_123449_138 | 162565 | 162903 | - | 4.A.3.1.2 |
| TF | k141_123449 | k141_123449_139 | 163118 | 164152 | - | LacI |
| TC | k141_123449 | k141_123449_140 | 164480 | 166255 | + | 4.A.3.1.1 |
| CAZyme | k141_123449 | k141_123449_141 | 166322 | 167761 | + | GH1 |
| TF | k141_123449 | k141_123449_142 | 168039 | 169076 | - | LacI |
| CAZyme | k141_123449 | k141_123449_143 | 169418 | 170860 | + | GH1 |
| TC | k141_123449 | k141_123449_144 | 171037 | 172797 | + | 4.A.3.1.1 |
| TF | k141_123449 | k141_123449_145 | 173132 | 174142 | - | LacI |
| TC | k141_123449 | k141_123449_146 | 174418 | 176196 | + | 4.A.3.1.1 |
| CAZyme | k141_123449 | k141_123449_147 | 176272 | 177693 | + | GH1 |
| pfam | k141_123449 | k141_123449_148 | 178058 | 179290 | + | Fic |
| STP | k141_123449 | k141_123449_149 | 179339 | 179668 | - | DeoRC |
| TC | k141_123449 | k141_123449_150 | 179831 | 181525 | - | 4.A.3.1.1 |
Gene ID: k141_123449_138
Type: TC
Location: 162565 - 162903 (-)
Type: TC
Location: 162565 - 162903 (-)
Gene ID: k141_123449_139
Type: TF
Location: 163118 - 164152 (-)
Type: TF
Location: 163118 - 164152 (-)
Gene ID: k141_123449_140
Type: TC
Location: 164480 - 166255 (+)
Type: TC
Location: 164480 - 166255 (+)
Gene ID: k141_123449_141
Type: CAZyme
Location: 166322 - 167761 (+)
Type: CAZyme
Location: 166322 - 167761 (+)
Gene ID: k141_123449_142
Type: TF
Location: 168039 - 169076 (-)
Type: TF
Location: 168039 - 169076 (-)
Gene ID: k141_123449_143
Type: CAZyme
Location: 169418 - 170860 (+)
Type: CAZyme
Location: 169418 - 170860 (+)
Gene ID: k141_123449_144
Type: TC
Location: 171037 - 172797 (+)
Type: TC
Location: 171037 - 172797 (+)
Gene ID: k141_123449_145
Type: TF
Location: 173132 - 174142 (-)
Type: TF
Location: 173132 - 174142 (-)
Gene ID: k141_123449_146
Type: TC
Location: 174418 - 176196 (+)
Type: TC
Location: 174418 - 176196 (+)
Gene ID: k141_123449_147
Type: CAZyme
Location: 176272 - 177693 (+)
Type: CAZyme
Location: 176272 - 177693 (+)
Gene ID: k141_123449_148
Type: pfam
Location: 178058 - 179290 (+)
Type: pfam
Location: 178058 - 179290 (+)
Gene ID: k141_123449_149
Type: STP
Location: 179339 - 179668 (-)
Type: STP
Location: 179339 - 179668 (-)
Gene ID: k141_123449_150
Type: TC
Location: 179831 - 181525 (-)
Type: TC
Location: 179831 - 181525 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958445065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.