Cluster: SPMP88_bin.46_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP88_bin.46
- CGC Family ID: CGCFAM_03510
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_348607 | opera_contig_348607_537 | 544167 | 546038 | + | 4.A.2.1.7 |
| NULL(UNKNOWN) | opera_contig_348607 | opera_contig_348607_538 | 546429 | 547376 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_348607 | opera_contig_348607_539 | 547833 | 549539 | + | 2.A.114.1.3 |
| pfam | opera_contig_348607 | opera_contig_348607_540 | 550038 | 551198 | + | Nuc_H_symport | MFS_1 | MFS_1_like |
| pfam | opera_contig_348607 | opera_contig_348607_541 | 551651 | 552655 | - | OrfB_IS605 | Cas12f1-like_TNB |
| TC | opera_contig_348607 | opera_contig_348607_542 | 553193 | 554620 | + | 4.A.1.1.7 |
| pfam | opera_contig_348607 | opera_contig_348607_543 | 554632 | 555456 | + | PRD | PRD | CAT_RBD |
| pfam | opera_contig_348607 | opera_contig_348607_544 | 555666 | 556496 | + | PRD | PRD | CAT_RBD |
| TC | opera_contig_348607 | opera_contig_348607_545 | 556586 | 558448 | + | 4.A.1.2.11 |
| pfam | opera_contig_348607 | opera_contig_348607_546 | 558452 | 559159 | + | YdjC |
| pfam | opera_contig_348607 | opera_contig_348607_547 | 559319 | 560035 | + | DUF1275 |
| CAZyme | opera_contig_348607 | opera_contig_348607_548 | 560856 | 566114 | + | GH84 |
Gene ID: opera_contig_348607_537
Type: TC
Location: 544167 - 546038 (+)
Type: TC
Location: 544167 - 546038 (+)
Gene ID: opera_contig_348607_538
Type:
Location: 546429 - 547376 (+)
Type:
Location: 546429 - 547376 (+)
Gene ID: opera_contig_348607_539
Type: TC
Location: 547833 - 549539 (+)
Type: TC
Location: 547833 - 549539 (+)
Gene ID: opera_contig_348607_540
Type: pfam
Location: 550038 - 551198 (+)
Type: pfam
Location: 550038 - 551198 (+)
Gene ID: opera_contig_348607_541
Type: pfam
Location: 551651 - 552655 (-)
Type: pfam
Location: 551651 - 552655 (-)
Gene ID: opera_contig_348607_542
Type: TC
Location: 553193 - 554620 (+)
Type: TC
Location: 553193 - 554620 (+)
Gene ID: opera_contig_348607_543
Type: pfam
Location: 554632 - 555456 (+)
Type: pfam
Location: 554632 - 555456 (+)
Gene ID: opera_contig_348607_544
Type: pfam
Location: 555666 - 556496 (+)
Type: pfam
Location: 555666 - 556496 (+)
Gene ID: opera_contig_348607_545
Type: TC
Location: 556586 - 558448 (+)
Type: TC
Location: 556586 - 558448 (+)
Gene ID: opera_contig_348607_546
Type: pfam
Location: 558452 - 559159 (+)
Type: pfam
Location: 558452 - 559159 (+)
Gene ID: opera_contig_348607_547
Type: pfam
Location: 559319 - 560035 (+)
Type: pfam
Location: 559319 - 560035 (+)
Gene ID: opera_contig_348607_548
Type: CAZyme
Location: 560856 - 566114 (+)
Type: CAZyme
Location: 560856 - 566114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_348607_539 | vegan > omnivore | 1.12879 | 0.04889 |
| opera_contig_348607_541 | vegan > omnivore | 1.76631 | 0.04889 |