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Cluster: SPMP87_bin.22_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme opera_contig_95485 opera_contig_95485_438 489788 491473 + GH18
pfam opera_contig_95485 opera_contig_95485_439 491516 493009 + Metallophos | CNP_C_terminal
pfam opera_contig_95485 opera_contig_95485_440 493106 493828 + Amidase_3
TC opera_contig_95485 opera_contig_95485_441 493873 494775 + 2.A.7.3.12
pfam opera_contig_95485 opera_contig_95485_442 495165 496547 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC opera_contig_95485 opera_contig_95485_443 496671 497534 - 2.A.115.1.5
Gene ID: opera_contig_95485_438
Type: CAZyme
Location: 489788 - 491473 (+)
Gene ID: opera_contig_95485_439
Type: pfam
Location: 491516 - 493009 (+)
Gene ID: opera_contig_95485_440
Type: pfam
Location: 493106 - 493828 (+)
Gene ID: opera_contig_95485_441
Type: TC
Location: 493873 - 494775 (+)
Gene ID: opera_contig_95485_442
Type: pfam
Location: 495165 - 496547 (-)
Gene ID: opera_contig_95485_443
Type: TC
Location: 496671 - 497534 (-)

Taxonomic Lineage

Domain
Bacteria

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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