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Cluster: SPMP72_bin.44_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme opera_contig_125215 opera_contig_125215_34 35198 35860 + GT2
CAZyme opera_contig_125215 opera_contig_125215_35 36177 36497 + GT2
NULL(UNKNOWN) opera_contig_125215 opera_contig_125215_36 36612 37031 + NULL(UNKNOWN)
[View Structural Homologs]
TC opera_contig_125215 opera_contig_125215_37 37045 37638 + 2.A.66.2.16
TC opera_contig_125215 opera_contig_125215_38 37736 38491 + 2.A.66.2.16
pfam opera_contig_125215 opera_contig_125215_39 38556 39395 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme opera_contig_125215 opera_contig_125215_40 39487 40449 + GT2
CAZyme opera_contig_125215 opera_contig_125215_41 40459 41373 + GT2
Gene ID: opera_contig_125215_34
Type: CAZyme
Location: 35198 - 35860 (+)
Gene ID: opera_contig_125215_35
Type: CAZyme
Location: 36177 - 36497 (+)
Gene ID: opera_contig_125215_36
Type:
Location: 36612 - 37031 (+)
Gene ID: opera_contig_125215_37
Type: TC
Location: 37045 - 37638 (+)
Gene ID: opera_contig_125215_38
Type: TC
Location: 37736 - 38491 (+)
Gene ID: opera_contig_125215_39
Type: pfam
Location: 38556 - 39395 (+)
Gene ID: opera_contig_125215_40
Type: CAZyme
Location: 39487 - 40449 (+)
Gene ID: opera_contig_125215_41
Type: CAZyme
Location: 40459 - 41373 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
opera_contig_125215_39 vegan > omnivore 1.47750 0.00191

🧭 Explore Read Mapping of CGC

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