Cluster: SPMP71_bin.54_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP71_bin.54
- CGC Family ID: CGCFAM_00089
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_258 | opera_contig_258_11 | 12017 | 13075 | - | 3.D.10.1.4 |
| NULL(UNKNOWN) | opera_contig_258 | opera_contig_258_12 | 13068 | 13520 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | opera_contig_258 | opera_contig_258_13 | 14474 | 15883 | + | PALP |
| TC | opera_contig_258 | opera_contig_258_14 | 15985 | 16425 | + | 1.A.22.1.3 |
| TF | opera_contig_258 | opera_contig_258_15 | 16651 | 16908 | + | HTH_3 |
| pfam | opera_contig_258 | opera_contig_258_16 | 17052 | 19235 | + | S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region |
| TC | opera_contig_258 | opera_contig_258_17 | 19254 | 20429 | + | 2.A.4.7.9 |
| pfam | opera_contig_258 | opera_contig_258_18 | 20474 | 21376 | + | Fic |
| peptidase | opera_contig_258 | opera_contig_258_19 | 21556 | 23637 | + | S08.UPA |
| CAZyme | opera_contig_258 | opera_contig_258_20 | 23737 | 24930 | + | GT2 |
Gene ID: opera_contig_258_11
Type: TC
Location: 12017 - 13075 (-)
Type: TC
Location: 12017 - 13075 (-)
Gene ID: opera_contig_258_12
Type:
Location: 13068 - 13520 (-)
Type:
Location: 13068 - 13520 (-)
Gene ID: opera_contig_258_13
Type: STP
Location: 14474 - 15883 (+)
Type: STP
Location: 14474 - 15883 (+)
Gene ID: opera_contig_258_14
Type: TC
Location: 15985 - 16425 (+)
Type: TC
Location: 15985 - 16425 (+)
Gene ID: opera_contig_258_15
Type: TF
Location: 16651 - 16908 (+)
Type: TF
Location: 16651 - 16908 (+)
Gene ID: opera_contig_258_16
Type: pfam
Location: 17052 - 19235 (+)
Type: pfam
Location: 17052 - 19235 (+)
Gene ID: opera_contig_258_17
Type: TC
Location: 19254 - 20429 (+)
Type: TC
Location: 19254 - 20429 (+)
Gene ID: opera_contig_258_18
Type: pfam
Location: 20474 - 21376 (+)
Type: pfam
Location: 20474 - 21376 (+)
Gene ID: opera_contig_258_19
Type: peptidase
Location: 21556 - 23637 (+)
Type: peptidase
Location: 21556 - 23637 (+)
Gene ID: opera_contig_258_20
Type: CAZyme
Location: 23737 - 24930 (+)
Type: CAZyme
Location: 23737 - 24930 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Slackia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.