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Cluster: SPMP65_bin.15_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme opera_contig_10 opera_contig_10_46 41199 42275 - CBM35inCE17 | CE17
CAZyme opera_contig_10 opera_contig_10_47 42275 43324 - CE2
CAZyme opera_contig_10 opera_contig_10_48 43459 44490 - GH130_2
TC opera_contig_10 opera_contig_10_49 44535 45380 - 3.A.1.1.18
TC opera_contig_10 opera_contig_10_50 45380 46357 - 3.A.1.1.28
STP opera_contig_10 opera_contig_10_51 46606 47961 - SBP_bac_1
TF opera_contig_10 opera_contig_10_52 48279 49289 - LacI
CAZyme opera_contig_10 opera_contig_10_53 49432 51624 - GH36
Gene ID: opera_contig_10_46
Type: CAZyme
Location: 41199 - 42275 (-)
Gene ID: opera_contig_10_47
Type: CAZyme
Location: 42275 - 43324 (-)
Gene ID: opera_contig_10_48
Type: CAZyme
Location: 43459 - 44490 (-)
Gene ID: opera_contig_10_49
Type: TC
Location: 44535 - 45380 (-)
Gene ID: opera_contig_10_50
Type: TC
Location: 45380 - 46357 (-)
Gene ID: opera_contig_10_51
Type: STP
Location: 46606 - 47961 (-)
Gene ID: opera_contig_10_52
Type: TF
Location: 48279 - 49289 (-)
Gene ID: opera_contig_10_53
Type: CAZyme
Location: 49432 - 51624 (-)

Taxonomic Lineage

Domain
Bacteria

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
opera_contig_10_48 vegetarian > vegan 1.39602 0.01750
opera_contig_10_52 vegan > omnivore 3.31436 0.01144

🧭 Explore Read Mapping of CGC

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