Cluster: SPMP60_bin.73_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP60_bin.73
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_150541 | opera_contig_150541_204 | 235074 | 236450 | - | GH13_20 |
| TC | opera_contig_150541 | opera_contig_150541_205 | 236605 | 237801 | - | 2.A.1.2.18 |
| TC | opera_contig_150541 | opera_contig_150541_206 | 237923 | 240283 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | opera_contig_150541 | opera_contig_150541_207 | 240405 | 240725 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | opera_contig_150541 | opera_contig_150541_208 | 240773 | 241672 | - | S09.UPW |
| TC | opera_contig_150541 | opera_contig_150541_209 | 241917 | 242480 | + | 4.A.1.2.6 |
| pfam | opera_contig_150541 | opera_contig_150541_210 | 242662 | 244065 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | opera_contig_150541 | opera_contig_150541_211 | 244315 | 245100 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_150541 | opera_contig_150541_212 | 245261 | 246241 | + | 3.A.1.34.1 |
| TC | opera_contig_150541 | opera_contig_150541_213 | 246444 | 247367 | + | 3.A.1.34.1 |
| TC | opera_contig_150541 | opera_contig_150541_214 | 247360 | 248154 | + | 3.A.1.34.1 |
Gene ID: opera_contig_150541_204
Type: CAZyme
Location: 235074 - 236450 (-)
Type: CAZyme
Location: 235074 - 236450 (-)
Gene ID: opera_contig_150541_205
Type: TC
Location: 236605 - 237801 (-)
Type: TC
Location: 236605 - 237801 (-)
Gene ID: opera_contig_150541_206
Type: TC
Location: 237923 - 240283 (-)
Type: TC
Location: 237923 - 240283 (-)
Gene ID: opera_contig_150541_207
Type:
Location: 240405 - 240725 (-)
Type:
Location: 240405 - 240725 (-)
Gene ID: opera_contig_150541_208
Type: peptidase
Location: 240773 - 241672 (-)
Type: peptidase
Location: 240773 - 241672 (-)
Gene ID: opera_contig_150541_209
Type: TC
Location: 241917 - 242480 (+)
Type: TC
Location: 241917 - 242480 (+)
Gene ID: opera_contig_150541_210
Type: pfam
Location: 242662 - 244065 (+)
Type: pfam
Location: 242662 - 244065 (+)
Gene ID: opera_contig_150541_211
Type:
Location: 244315 - 245100 (+)
Type:
Location: 244315 - 245100 (+)
Gene ID: opera_contig_150541_212
Type: TC
Location: 245261 - 246241 (+)
Type: TC
Location: 245261 - 246241 (+)
Gene ID: opera_contig_150541_213
Type: TC
Location: 246444 - 247367 (+)
Type: TC
Location: 246444 - 247367 (+)
Gene ID: opera_contig_150541_214
Type: TC
Location: 247360 - 248154 (+)
Type: TC
Location: 247360 - 248154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.