Cluster: SPMP60_bin.73_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP60_bin.73
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_150541 | opera_contig_150541_427 | 488361 | 489719 | - | 2.A.33.1.1 |
| pfam | opera_contig_150541 | opera_contig_150541_428 | 489985 | 490908 | - | DHH | DHHA2 |
| pfam | opera_contig_150541 | opera_contig_150541_429 | 491073 | 492026 | - | ROK |
| TC | opera_contig_150541 | opera_contig_150541_430 | 492269 | 492601 | - | 4.A.3.2.3 |
| TC | opera_contig_150541 | opera_contig_150541_431 | 492611 | 492913 | - | 4.A.3.2.9 |
| TC | opera_contig_150541 | opera_contig_150541_432 | 493067 | 494419 | - | 4.A.3.2.2 |
| CAZyme | opera_contig_150541 | opera_contig_150541_433 | 494540 | 495940 | - | GH1 |
Gene ID: opera_contig_150541_427
Type: TC
Location: 488361 - 489719 (-)
Type: TC
Location: 488361 - 489719 (-)
Gene ID: opera_contig_150541_428
Type: pfam
Location: 489985 - 490908 (-)
Type: pfam
Location: 489985 - 490908 (-)
Gene ID: opera_contig_150541_429
Type: pfam
Location: 491073 - 492026 (-)
Type: pfam
Location: 491073 - 492026 (-)
Gene ID: opera_contig_150541_430
Type: TC
Location: 492269 - 492601 (-)
Type: TC
Location: 492269 - 492601 (-)
Gene ID: opera_contig_150541_431
Type: TC
Location: 492611 - 492913 (-)
Type: TC
Location: 492611 - 492913 (-)
Gene ID: opera_contig_150541_432
Type: TC
Location: 493067 - 494419 (-)
Type: TC
Location: 493067 - 494419 (-)
Gene ID: opera_contig_150541_433
Type: CAZyme
Location: 494540 - 495940 (-)
Type: CAZyme
Location: 494540 - 495940 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.