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Cluster: SPMP46_bin.66_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_117265 opera_contig_117265_51 50882 51577 + 2.A.78.1.1
TC opera_contig_117265 opera_contig_117265_52 51577 51900 + 2.A.78.1.1
pfam opera_contig_117265 opera_contig_117265_53 51881 53257 - FAD-depend_C
NULL(UNKNOWN) opera_contig_117265 opera_contig_117265_54 53244 53549 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme opera_contig_117265 opera_contig_117265_55 53630 56146 - GH25
NULL(UNKNOWN) opera_contig_117265 opera_contig_117265_56 56754 57008 - NULL(UNKNOWN)
[View Structural Homologs]
pfam opera_contig_117265 opera_contig_117265_57 57058 57714 - PhoU | PhoU
TC opera_contig_117265 opera_contig_117265_58 57714 58466 - 3.A.1.7.5
TC opera_contig_117265 opera_contig_117265_59 58488 59372 - 3.A.1.7.5
TC opera_contig_117265 opera_contig_117265_60 59372 60226 - 3.A.1.7.5
pfam opera_contig_117265 opera_contig_117265_61 60297 61238 - PBP_like_2 | PBP_like_2
TC opera_contig_117265 opera_contig_117265_62 61655 62542 - 2.A.4.7.2
pfam opera_contig_117265 opera_contig_117265_63 62819 63658 - Lactamase_B
pfam opera_contig_117265 opera_contig_117265_64 63735 65405 - Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3
CAZyme opera_contig_117265 opera_contig_117265_65 65596 68091 + CBM13 | CBM13
CAZyme opera_contig_117265 opera_contig_117265_66 68157 69122 - GT2
peptidase opera_contig_117265 opera_contig_117265_67 69254 71206 - C40.UNW
TC opera_contig_117265 opera_contig_117265_68 71231 73087 - 9.B.10.1.1
Gene ID: opera_contig_117265_51
Type: TC
Location: 50882 - 51577 (+)
Gene ID: opera_contig_117265_52
Type: TC
Location: 51577 - 51900 (+)
Gene ID: opera_contig_117265_53
Type: pfam
Location: 51881 - 53257 (-)
Gene ID: opera_contig_117265_54
Type:
Location: 53244 - 53549 (-)
Gene ID: opera_contig_117265_55
Type: CAZyme
Location: 53630 - 56146 (-)
Gene ID: opera_contig_117265_56
Type:
Location: 56754 - 57008 (-)
Gene ID: opera_contig_117265_57
Type: pfam
Location: 57058 - 57714 (-)
Gene ID: opera_contig_117265_58
Type: TC
Location: 57714 - 58466 (-)
Gene ID: opera_contig_117265_59
Type: TC
Location: 58488 - 59372 (-)
Gene ID: opera_contig_117265_60
Type: TC
Location: 59372 - 60226 (-)
Gene ID: opera_contig_117265_61
Type: pfam
Location: 60297 - 61238 (-)
Gene ID: opera_contig_117265_62
Type: TC
Location: 61655 - 62542 (-)
Gene ID: opera_contig_117265_63
Type: pfam
Location: 62819 - 63658 (-)
Gene ID: opera_contig_117265_64
Type: pfam
Location: 63735 - 65405 (-)
Gene ID: opera_contig_117265_65
Type: CAZyme
Location: 65596 - 68091 (+)
Gene ID: opera_contig_117265_66
Type: CAZyme
Location: 68157 - 69122 (-)
Gene ID: opera_contig_117265_67
Type: peptidase
Location: 69254 - 71206 (-)
Gene ID: opera_contig_117265_68
Type: TC
Location: 71231 - 73087 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
opera_contig_117265_55 vegan > omnivore 1.31540 0.01924
opera_contig_117265_60 vegan > omnivore 1.66071 0.01924

🧭 Explore Read Mapping of CGC

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