Cluster: SPMP45_bin.85_CGC5
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP45_bin.85
- CGC Family ID: CGCFAM_06055
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_293921 | opera_contig_293921_747 | 870755 | 873622 | + | 3.A.3.1.8 |
| TC | opera_contig_293921 | opera_contig_293921_748 | 873655 | 874278 | + | 3.A.3.1.8 |
| TC | opera_contig_293921 | opera_contig_293921_749 | 874287 | 874946 | + | 3.A.3.1.8 |
| NULL(UNKNOWN) | opera_contig_293921 | opera_contig_293921_750 | 875133 | 875300 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_293921 | opera_contig_293921_751 | 875373 | 876269 | - | TP_methylase |
| CAZyme | opera_contig_293921 | opera_contig_293921_752 | 876282 | 877364 | - | GH5_44 |
| CAZyme | opera_contig_293921 | opera_contig_293921_753 | 877425 | 878678 | - | GH29 |
| TC | opera_contig_293921 | opera_contig_293921_754 | 878783 | 880633 | - | 3.A.1.135.7 |
| TC | opera_contig_293921 | opera_contig_293921_755 | 880633 | 882363 | - | 3.A.1.135.5 |
Gene ID: opera_contig_293921_747
Type: TC
Location: 870755 - 873622 (+)
Type: TC
Location: 870755 - 873622 (+)
Gene ID: opera_contig_293921_748
Type: TC
Location: 873655 - 874278 (+)
Type: TC
Location: 873655 - 874278 (+)
Gene ID: opera_contig_293921_749
Type: TC
Location: 874287 - 874946 (+)
Type: TC
Location: 874287 - 874946 (+)
Gene ID: opera_contig_293921_750
Type:
Location: 875133 - 875300 (+)
Type:
Location: 875133 - 875300 (+)
Gene ID: opera_contig_293921_751
Type: pfam
Location: 875373 - 876269 (-)
Type: pfam
Location: 875373 - 876269 (-)
Gene ID: opera_contig_293921_752
Type: CAZyme
Location: 876282 - 877364 (-)
Type: CAZyme
Location: 876282 - 877364 (-)
Gene ID: opera_contig_293921_753
Type: CAZyme
Location: 877425 - 878678 (-)
Type: CAZyme
Location: 877425 - 878678 (-)
Gene ID: opera_contig_293921_754
Type: TC
Location: 878783 - 880633 (-)
Type: TC
Location: 878783 - 880633 (-)
Gene ID: opera_contig_293921_755
Type: TC
Location: 880633 - 882363 (-)
Type: TC
Location: 880633 - 882363 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Parolsenella
Species
Parolsenella catena
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_293921_747 | vegetarian > vegan | 1.13143 | 0.00565 |
| opera_contig_293921_748 | vegetarian > vegan | 2.32100 | 0.00565 |
| opera_contig_293921_749 | vegetarian > vegan | 2.22107 | 0.00565 |
| opera_contig_293921_750 | vegetarian > vegan | 2.68507 | 0.00565 |
| opera_contig_293921_752 | vegetarian > omnivore | 2.34527 | 0.03116 |
| opera_contig_293921_752 | vegetarian > vegan | 1.95544 | 0.00565 |
| opera_contig_293921_755 | vegetarian > omnivore | 1.23375 | 0.03116 |