Cluster: SPMP39_bin.3_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP39_bin.3
- CGC Family ID: CGCFAM_00286
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_227093 | opera_contig_227093_916 | 1157896 | 1160346 | - | 4.A.1.1.8 |
| TF | opera_contig_227093 | opera_contig_227093_917 | 1160573 | 1161292 | + | GntR |
| TC | opera_contig_227093 | opera_contig_227093_918 | 1161599 | 1162915 | + | 3.A.1.1.45 |
| TC | opera_contig_227093 | opera_contig_227093_919 | 1163003 | 1163857 | + | 3.A.1.1.45 |
| TC | opera_contig_227093 | opera_contig_227093_920 | 1163857 | 1164546 | + | 3.A.1.1.45 |
| NULL(UNKNOWN) | opera_contig_227093 | opera_contig_227093_921 | 1164543 | 1164695 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_227093 | opera_contig_227093_922 | 1165437 | 1165961 | + | 3.A.1.1.22 |
| CAZyme | opera_contig_227093 | opera_contig_227093_923 | 1166337 | 1168604 | - | GT35 |
| CAZyme | opera_contig_227093 | opera_contig_227093_924 | 1168734 | 1170239 | - | GH77 |
Gene ID: opera_contig_227093_916
Type: TC
Location: 1157896 - 1160346 (-)
Type: TC
Location: 1157896 - 1160346 (-)
Gene ID: opera_contig_227093_917
Type: TF
Location: 1160573 - 1161292 (+)
Type: TF
Location: 1160573 - 1161292 (+)
Gene ID: opera_contig_227093_918
Type: TC
Location: 1161599 - 1162915 (+)
Type: TC
Location: 1161599 - 1162915 (+)
Gene ID: opera_contig_227093_919
Type: TC
Location: 1163003 - 1163857 (+)
Type: TC
Location: 1163003 - 1163857 (+)
Gene ID: opera_contig_227093_920
Type: TC
Location: 1163857 - 1164546 (+)
Type: TC
Location: 1163857 - 1164546 (+)
Gene ID: opera_contig_227093_921
Type:
Location: 1164543 - 1164695 (+)
Type:
Location: 1164543 - 1164695 (+)
Gene ID: opera_contig_227093_922
Type: TC
Location: 1165437 - 1165961 (+)
Type: TC
Location: 1165437 - 1165961 (+)
Gene ID: opera_contig_227093_923
Type: CAZyme
Location: 1166337 - 1168604 (-)
Type: CAZyme
Location: 1166337 - 1168604 (-)
Gene ID: opera_contig_227093_924
Type: CAZyme
Location: 1168734 - 1170239 (-)
Type: CAZyme
Location: 1168734 - 1170239 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.