Cluster: SPMP39_bin.3_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP39_bin.3
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_227093 | opera_contig_227093_380 | 453216 | 454340 | - | GH172 |
| pfam | opera_contig_227093 | opera_contig_227093_381 | 454353 | 454751 | - | EIIA-man |
| TC | opera_contig_227093 | opera_contig_227093_382 | 454778 | 455611 | - | 4.A.6.1.13 |
| TC | opera_contig_227093 | opera_contig_227093_383 | 455614 | 456399 | - | 4.A.6.1.13 |
| TC | opera_contig_227093 | opera_contig_227093_384 | 456409 | 456882 | - | 4.A.6.1.18 |
Gene ID: opera_contig_227093_380
Type: CAZyme
Location: 453216 - 454340 (-)
Type: CAZyme
Location: 453216 - 454340 (-)
Gene ID: opera_contig_227093_381
Type: pfam
Location: 454353 - 454751 (-)
Type: pfam
Location: 454353 - 454751 (-)
Gene ID: opera_contig_227093_382
Type: TC
Location: 454778 - 455611 (-)
Type: TC
Location: 454778 - 455611 (-)
Gene ID: opera_contig_227093_383
Type: TC
Location: 455614 - 456399 (-)
Type: TC
Location: 455614 - 456399 (-)
Gene ID: opera_contig_227093_384
Type: TC
Location: 456409 - 456882 (-)
Type: TC
Location: 456409 - 456882 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_227093_380 | vegan > omnivore | 1.01016 | 0.00701 |
| opera_contig_227093_384 | vegan > omnivore | 1.11343 | 0.00701 |