Cluster: SPMP39_bin.3_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP39_bin.3
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_227093 | opera_contig_227093_1519 | 1856206 | 1858617 | - | 9.B.144.1.5 |
| CAZyme | opera_contig_227093 | opera_contig_227093_1520 | 1858601 | 1859569 | - | GT2 |
| CAZyme | opera_contig_227093 | opera_contig_227093_1521 | 1859576 | 1860547 | - | GT81 |
| TC | opera_contig_227093 | opera_contig_227093_1522 | 1860708 | 1861553 | + | 3.A.1.103.6 |
| TC | opera_contig_227093 | opera_contig_227093_1523 | 1861565 | 1862332 | + | 3.A.1.103.1 |
| TC | opera_contig_227093 | opera_contig_227093_1524 | 1862539 | 1863525 | + | 9.B.97.6.3 |
Gene ID: opera_contig_227093_1519
Type: TC
Location: 1856206 - 1858617 (-)
Type: TC
Location: 1856206 - 1858617 (-)
Gene ID: opera_contig_227093_1520
Type: CAZyme
Location: 1858601 - 1859569 (-)
Type: CAZyme
Location: 1858601 - 1859569 (-)
Gene ID: opera_contig_227093_1521
Type: CAZyme
Location: 1859576 - 1860547 (-)
Type: CAZyme
Location: 1859576 - 1860547 (-)
Gene ID: opera_contig_227093_1522
Type: TC
Location: 1860708 - 1861553 (+)
Type: TC
Location: 1860708 - 1861553 (+)
Gene ID: opera_contig_227093_1523
Type: TC
Location: 1861565 - 1862332 (+)
Type: TC
Location: 1861565 - 1862332 (+)
Gene ID: opera_contig_227093_1524
Type: TC
Location: 1862539 - 1863525 (+)
Type: TC
Location: 1862539 - 1863525 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.