Cluster: SPMP39_bin.3_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP39_bin.3
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_227093 | opera_contig_227093_1212 | 1487604 | 1488398 | - | 3.A.1.34.1 |
| TC | opera_contig_227093 | opera_contig_227093_1213 | 1488391 | 1489314 | - | 3.A.1.34.1 |
| TC | opera_contig_227093 | opera_contig_227093_1214 | 1489519 | 1490499 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | opera_contig_227093 | opera_contig_227093_1215 | 1490660 | 1491445 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_227093 | opera_contig_227093_1216 | 1491695 | 1493098 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | opera_contig_227093 | opera_contig_227093_1217 | 1493280 | 1493843 | - | 4.A.1.2.6 |
| peptidase | opera_contig_227093 | opera_contig_227093_1218 | 1494087 | 1494986 | + | S09.UPW |
| NULL(UNKNOWN) | opera_contig_227093 | opera_contig_227093_1219 | 1495034 | 1495354 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_227093 | opera_contig_227093_1220 | 1495476 | 1497836 | + | 9.A.8.1.6 |
| TC | opera_contig_227093 | opera_contig_227093_1221 | 1497958 | 1499154 | + | 2.A.1.2.18 |
| CAZyme | opera_contig_227093 | opera_contig_227093_1222 | 1499308 | 1500684 | + | GH13_20 |
Gene ID: opera_contig_227093_1212
Type: TC
Location: 1487604 - 1488398 (-)
Type: TC
Location: 1487604 - 1488398 (-)
Gene ID: opera_contig_227093_1213
Type: TC
Location: 1488391 - 1489314 (-)
Type: TC
Location: 1488391 - 1489314 (-)
Gene ID: opera_contig_227093_1214
Type: TC
Location: 1489519 - 1490499 (-)
Type: TC
Location: 1489519 - 1490499 (-)
Gene ID: opera_contig_227093_1215
Type:
Location: 1490660 - 1491445 (-)
Type:
Location: 1490660 - 1491445 (-)
Gene ID: opera_contig_227093_1216
Type: pfam
Location: 1491695 - 1493098 (-)
Type: pfam
Location: 1491695 - 1493098 (-)
Gene ID: opera_contig_227093_1217
Type: TC
Location: 1493280 - 1493843 (-)
Type: TC
Location: 1493280 - 1493843 (-)
Gene ID: opera_contig_227093_1218
Type: peptidase
Location: 1494087 - 1494986 (+)
Type: peptidase
Location: 1494087 - 1494986 (+)
Gene ID: opera_contig_227093_1219
Type:
Location: 1495034 - 1495354 (+)
Type:
Location: 1495034 - 1495354 (+)
Gene ID: opera_contig_227093_1220
Type: TC
Location: 1495476 - 1497836 (+)
Type: TC
Location: 1495476 - 1497836 (+)
Gene ID: opera_contig_227093_1221
Type: TC
Location: 1497958 - 1499154 (+)
Type: TC
Location: 1497958 - 1499154 (+)
Gene ID: opera_contig_227093_1222
Type: CAZyme
Location: 1499308 - 1500684 (+)
Type: CAZyme
Location: 1499308 - 1500684 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.