Cluster: SPMP39_bin.3_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP39_bin.3
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_227093 | opera_contig_227093_1039 | 1286192 | 1287613 | - | GH1 |
| TC | opera_contig_227093 | opera_contig_227093_1040 | 1287690 | 1289468 | - | 4.A.3.1.1 |
| TF | opera_contig_227093 | opera_contig_227093_1041 | 1289744 | 1290754 | + | LacI |
| CAZyme | opera_contig_227093 | opera_contig_227093_1042 | 1291105 | 1292544 | - | GH1 |
| TC | opera_contig_227093 | opera_contig_227093_1043 | 1292611 | 1294386 | - | 4.A.3.1.1 |
| TF | opera_contig_227093 | opera_contig_227093_1044 | 1294743 | 1295747 | + | LacI |
| TC | opera_contig_227093 | opera_contig_227093_1045 | 1295962 | 1296300 | + | 4.A.3.1.2 |
Gene ID: opera_contig_227093_1039
Type: CAZyme
Location: 1286192 - 1287613 (-)
Type: CAZyme
Location: 1286192 - 1287613 (-)
Gene ID: opera_contig_227093_1040
Type: TC
Location: 1287690 - 1289468 (-)
Type: TC
Location: 1287690 - 1289468 (-)
Gene ID: opera_contig_227093_1041
Type: TF
Location: 1289744 - 1290754 (+)
Type: TF
Location: 1289744 - 1290754 (+)
Gene ID: opera_contig_227093_1042
Type: CAZyme
Location: 1291105 - 1292544 (-)
Type: CAZyme
Location: 1291105 - 1292544 (-)
Gene ID: opera_contig_227093_1043
Type: TC
Location: 1292611 - 1294386 (-)
Type: TC
Location: 1292611 - 1294386 (-)
Gene ID: opera_contig_227093_1044
Type: TF
Location: 1294743 - 1295747 (+)
Type: TF
Location: 1294743 - 1295747 (+)
Gene ID: opera_contig_227093_1045
Type: TC
Location: 1295962 - 1296300 (+)
Type: TC
Location: 1295962 - 1296300 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.