Cluster: SPMP36_bin.17_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP36_bin.17
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_18 | opera_contig_18_79 | 88845 | 90245 | + | GH1 |
| TC | opera_contig_18 | opera_contig_18_80 | 90366 | 91718 | + | 4.A.3.2.2 |
| TC | opera_contig_18 | opera_contig_18_81 | 91872 | 92174 | + | 4.A.3.2.9 |
| TC | opera_contig_18 | opera_contig_18_82 | 92184 | 92516 | + | 4.A.3.2.3 |
| STP | opera_contig_18 | opera_contig_18_83 | 92759 | 93712 | + | Glucokinase |
| pfam | opera_contig_18 | opera_contig_18_84 | 93879 | 94802 | + | DHH | DHHA2 |
| TC | opera_contig_18 | opera_contig_18_85 | 95070 | 96428 | + | 2.A.33.1.1 |
Gene ID: opera_contig_18_79
Type: CAZyme
Location: 88845 - 90245 (+)
Type: CAZyme
Location: 88845 - 90245 (+)
Gene ID: opera_contig_18_80
Type: TC
Location: 90366 - 91718 (+)
Type: TC
Location: 90366 - 91718 (+)
Gene ID: opera_contig_18_81
Type: TC
Location: 91872 - 92174 (+)
Type: TC
Location: 91872 - 92174 (+)
Gene ID: opera_contig_18_82
Type: TC
Location: 92184 - 92516 (+)
Type: TC
Location: 92184 - 92516 (+)
Gene ID: opera_contig_18_83
Type: STP
Location: 92759 - 93712 (+)
Type: STP
Location: 92759 - 93712 (+)
Gene ID: opera_contig_18_84
Type: pfam
Location: 93879 - 94802 (+)
Type: pfam
Location: 93879 - 94802 (+)
Gene ID: opera_contig_18_85
Type: TC
Location: 95070 - 96428 (+)
Type: TC
Location: 95070 - 96428 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.