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Cluster: SPMP36_bin.17_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_3 opera_contig_3_272 309317 309655 - 4.A.3.1.2
TF opera_contig_3 opera_contig_3_273 309870 310874 - LacI
TC opera_contig_3 opera_contig_3_274 311232 313007 + 4.A.3.1.1
CAZyme opera_contig_3 opera_contig_3_275 313074 314513 + GH1
TF opera_contig_3 opera_contig_3_276 314703 315713 - LacI
TC opera_contig_3 opera_contig_3_277 315989 317767 + 4.A.3.1.1
CAZyme opera_contig_3 opera_contig_3_278 317843 319264 + GH1
NULL(UNKNOWN) opera_contig_3 opera_contig_3_279 319562 319828 + NULL(UNKNOWN)
[View Structural Homologs]
pfam opera_contig_3 opera_contig_3_280 319818 320123 + ParE_toxin
TC opera_contig_3 opera_contig_3_281 320483 322177 - 4.A.3.1.1
Gene ID: opera_contig_3_272
Type: TC
Location: 309317 - 309655 (-)
Gene ID: opera_contig_3_273
Type: TF
Location: 309870 - 310874 (-)
Gene ID: opera_contig_3_274
Type: TC
Location: 311232 - 313007 (+)
Gene ID: opera_contig_3_275
Type: CAZyme
Location: 313074 - 314513 (+)
Gene ID: opera_contig_3_276
Type: TF
Location: 314703 - 315713 (-)
Gene ID: opera_contig_3_277
Type: TC
Location: 315989 - 317767 (+)
Gene ID: opera_contig_3_278
Type: CAZyme
Location: 317843 - 319264 (+)
Gene ID: opera_contig_3_279
Type:
Location: 319562 - 319828 (+)
Gene ID: opera_contig_3_280
Type: pfam
Location: 319818 - 320123 (+)
Gene ID: opera_contig_3_281
Type: TC
Location: 320483 - 322177 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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