Cluster: SPMP36_bin.17_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP36_bin.17
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_3 | opera_contig_3_116 | 124819 | 126195 | - | GH13_20 |
| TC | opera_contig_3 | opera_contig_3_117 | 126275 | 127471 | - | 2.A.1.2.18 |
| TC | opera_contig_3 | opera_contig_3_118 | 127596 | 129956 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | opera_contig_3 | opera_contig_3_119 | 130078 | 130398 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | opera_contig_3 | opera_contig_3_120 | 130446 | 131345 | - | S09.UPW |
| TC | opera_contig_3 | opera_contig_3_121 | 131592 | 132155 | + | 4.A.1.2.6 |
| pfam | opera_contig_3 | opera_contig_3_122 | 132337 | 133740 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | opera_contig_3 | opera_contig_3_123 | 133990 | 134775 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_3 | opera_contig_3_124 | 134936 | 135916 | + | 3.A.1.34.1 |
| TC | opera_contig_3 | opera_contig_3_125 | 136106 | 137029 | + | 3.A.1.34.1 |
| TC | opera_contig_3 | opera_contig_3_126 | 137022 | 137816 | + | 3.A.1.34.1 |
| pfam | opera_contig_3 | opera_contig_3_127 | 137974 | 140001 | + | Metallophos | 5_nucleotid_C |
| TC | opera_contig_3 | opera_contig_3_128 | 140130 | 140897 | + | 1.A.23.4.2 |
| pfam | opera_contig_3 | opera_contig_3_129 | 140991 | 142907 | + | Bmp |
| pfam | opera_contig_3 | opera_contig_3_130 | 142904 | 143614 | + | Metallophos | Metallophos_2 |
| TC | opera_contig_3 | opera_contig_3_131 | 143740 | 144447 | - | 1.C.82.1.1 |
Gene ID: opera_contig_3_116
Type: CAZyme
Location: 124819 - 126195 (-)
Type: CAZyme
Location: 124819 - 126195 (-)
Gene ID: opera_contig_3_117
Type: TC
Location: 126275 - 127471 (-)
Type: TC
Location: 126275 - 127471 (-)
Gene ID: opera_contig_3_118
Type: TC
Location: 127596 - 129956 (-)
Type: TC
Location: 127596 - 129956 (-)
Gene ID: opera_contig_3_119
Type:
Location: 130078 - 130398 (-)
Type:
Location: 130078 - 130398 (-)
Gene ID: opera_contig_3_120
Type: peptidase
Location: 130446 - 131345 (-)
Type: peptidase
Location: 130446 - 131345 (-)
Gene ID: opera_contig_3_121
Type: TC
Location: 131592 - 132155 (+)
Type: TC
Location: 131592 - 132155 (+)
Gene ID: opera_contig_3_122
Type: pfam
Location: 132337 - 133740 (+)
Type: pfam
Location: 132337 - 133740 (+)
Gene ID: opera_contig_3_123
Type:
Location: 133990 - 134775 (+)
Type:
Location: 133990 - 134775 (+)
Gene ID: opera_contig_3_124
Type: TC
Location: 134936 - 135916 (+)
Type: TC
Location: 134936 - 135916 (+)
Gene ID: opera_contig_3_125
Type: TC
Location: 136106 - 137029 (+)
Type: TC
Location: 136106 - 137029 (+)
Gene ID: opera_contig_3_126
Type: TC
Location: 137022 - 137816 (+)
Type: TC
Location: 137022 - 137816 (+)
Gene ID: opera_contig_3_127
Type: pfam
Location: 137974 - 140001 (+)
Type: pfam
Location: 137974 - 140001 (+)
Gene ID: opera_contig_3_128
Type: TC
Location: 140130 - 140897 (+)
Type: TC
Location: 140130 - 140897 (+)
Gene ID: opera_contig_3_129
Type: pfam
Location: 140991 - 142907 (+)
Type: pfam
Location: 140991 - 142907 (+)
Gene ID: opera_contig_3_130
Type: pfam
Location: 142904 - 143614 (+)
Type: pfam
Location: 142904 - 143614 (+)
Gene ID: opera_contig_3_131
Type: TC
Location: 143740 - 144447 (-)
Type: TC
Location: 143740 - 144447 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_3_127 | vegan > omnivore | 1.76372 | 0.01287 |
| opera_contig_3_127 | vegetarian > omnivore | 1.33833 | 0.03201 |