Cluster: SPMP28_bin.12_CGC59
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: SPMP28_bin.12
- CGC Family ID: CGCFAM_00937
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_254443 | opera_contig_254443_161 | 189711 | 191771 | - | GH13_36 |
| pfam | opera_contig_254443 | opera_contig_254443_162 | 191970 | 193484 | - | SusF_N |
| pfam | opera_contig_254443 | opera_contig_254443_163 | 193512 | 194675 | - | SusF_SusE |
| TC | opera_contig_254443 | opera_contig_254443_164 | 194708 | 196309 | - | 8.A.46.1.1 |
| TC | opera_contig_254443 | opera_contig_254443_165 | 196328 | 199387 | - | 1.B.14.6.1 |
| CAZyme | opera_contig_254443 | opera_contig_254443_166 | 199898 | 202378 | - | GH2 |
| CAZyme | opera_contig_254443 | opera_contig_254443_167 | 202401 | 203570 | - | GH53 |
| TF | opera_contig_254443 | opera_contig_254443_168 | 203825 | 204832 | + | LacI |
| TC | opera_contig_254443 | opera_contig_254443_169 | 204888 | 206258 | + | 2.A.2.6.2 |
| CAZyme | opera_contig_254443 | opera_contig_254443_170 | 206280 | 208598 | + | GH65 |
| pfam | opera_contig_254443 | opera_contig_254443_171 | 208617 | 209660 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | opera_contig_254443 | opera_contig_254443_172 | 209704 | 212736 | + | 2.A.6.2.37 |
| pfam | opera_contig_254443 | opera_contig_254443_173 | 212779 | 214050 | + | OEP | OEP |
| TC | opera_contig_254443 | opera_contig_254443_174 | 214143 | 215378 | - | 3.B.1.1.1 |
Gene ID: opera_contig_254443_161
Type: CAZyme
Location: 189711 - 191771 (-)
Type: CAZyme
Location: 189711 - 191771 (-)
Gene ID: opera_contig_254443_162
Type: pfam
Location: 191970 - 193484 (-)
Type: pfam
Location: 191970 - 193484 (-)
Gene ID: opera_contig_254443_163
Type: pfam
Location: 193512 - 194675 (-)
Type: pfam
Location: 193512 - 194675 (-)
Gene ID: opera_contig_254443_164
Type: TC
Location: 194708 - 196309 (-)
Type: TC
Location: 194708 - 196309 (-)
Gene ID: opera_contig_254443_165
Type: TC
Location: 196328 - 199387 (-)
Type: TC
Location: 196328 - 199387 (-)
Gene ID: opera_contig_254443_166
Type: CAZyme
Location: 199898 - 202378 (-)
Type: CAZyme
Location: 199898 - 202378 (-)
Gene ID: opera_contig_254443_167
Type: CAZyme
Location: 202401 - 203570 (-)
Type: CAZyme
Location: 202401 - 203570 (-)
Gene ID: opera_contig_254443_168
Type: TF
Location: 203825 - 204832 (+)
Type: TF
Location: 203825 - 204832 (+)
Gene ID: opera_contig_254443_169
Type: TC
Location: 204888 - 206258 (+)
Type: TC
Location: 204888 - 206258 (+)
Gene ID: opera_contig_254443_170
Type: CAZyme
Location: 206280 - 208598 (+)
Type: CAZyme
Location: 206280 - 208598 (+)
Gene ID: opera_contig_254443_171
Type: pfam
Location: 208617 - 209660 (+)
Type: pfam
Location: 208617 - 209660 (+)
Gene ID: opera_contig_254443_172
Type: TC
Location: 209704 - 212736 (+)
Type: TC
Location: 209704 - 212736 (+)
Gene ID: opera_contig_254443_173
Type: pfam
Location: 212779 - 214050 (+)
Type: pfam
Location: 212779 - 214050 (+)
Gene ID: opera_contig_254443_174
Type: TC
Location: 214143 - 215378 (-)
Type: TC
Location: 214143 - 215378 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides propionicigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.