Cluster: SPMP28_bin.12_CGC5
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: SPMP28_bin.12
- CGC Family ID: CGCFAM_00676
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_254439 | opera_contig_254439_195 | 254458 | 257685 | + | 1.B.14.6.1 |
| pfam | opera_contig_254439 | opera_contig_254439_196 | 257707 | 259482 | + | SusD_RagB | SusD-like_3 |
| TF | opera_contig_254439 | opera_contig_254439_197 | 259632 | 264104 | - | HTH_AraC |
| CAZyme | opera_contig_254439 | opera_contig_254439_198 | 264183 | 265340 | + | CE19 |
| CAZyme | opera_contig_254439 | opera_contig_254439_199 | 265357 | 266676 | - | CE7 |
| CAZyme | opera_contig_254439 | opera_contig_254439_200 | 266687 | 268453 | - | CE12 | CE8 |
| STP | opera_contig_254439 | opera_contig_254439_201 | 268515 | 268865 | + | AraC_binding |
| CAZyme | opera_contig_254439 | opera_contig_254439_202 | 268875 | 269843 | - | CE8 |
| CAZyme | opera_contig_254439 | opera_contig_254439_203 | 269843 | 271069 | - | GH105 |
| TC | opera_contig_254439 | opera_contig_254439_204 | 271361 | 272731 | + | 4.A.5.1.2 |
| pfam | opera_contig_254439 | opera_contig_254439_205 | 272784 | 273740 | + | KduI |
| TC | opera_contig_254439 | opera_contig_254439_206 | 273884 | 275323 | + | 2.A.1.14.25 |
| pfam | opera_contig_254439 | opera_contig_254439_207 | 275633 | 279076 | - | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | opera_contig_254439 | opera_contig_254439_208 | 279073 | 279897 | - | 2.A.64.2.1 |
Gene ID: opera_contig_254439_195
Type: TC
Location: 254458 - 257685 (+)
Type: TC
Location: 254458 - 257685 (+)
Gene ID: opera_contig_254439_196
Type: pfam
Location: 257707 - 259482 (+)
Type: pfam
Location: 257707 - 259482 (+)
Gene ID: opera_contig_254439_197
Type: TF
Location: 259632 - 264104 (-)
Type: TF
Location: 259632 - 264104 (-)
Gene ID: opera_contig_254439_198
Type: CAZyme
Location: 264183 - 265340 (+)
Type: CAZyme
Location: 264183 - 265340 (+)
Gene ID: opera_contig_254439_199
Type: CAZyme
Location: 265357 - 266676 (-)
Type: CAZyme
Location: 265357 - 266676 (-)
Gene ID: opera_contig_254439_200
Type: CAZyme
Location: 266687 - 268453 (-)
Type: CAZyme
Location: 266687 - 268453 (-)
Gene ID: opera_contig_254439_201
Type: STP
Location: 268515 - 268865 (+)
Type: STP
Location: 268515 - 268865 (+)
Gene ID: opera_contig_254439_202
Type: CAZyme
Location: 268875 - 269843 (-)
Type: CAZyme
Location: 268875 - 269843 (-)
Gene ID: opera_contig_254439_203
Type: CAZyme
Location: 269843 - 271069 (-)
Type: CAZyme
Location: 269843 - 271069 (-)
Gene ID: opera_contig_254439_204
Type: TC
Location: 271361 - 272731 (+)
Type: TC
Location: 271361 - 272731 (+)
Gene ID: opera_contig_254439_205
Type: pfam
Location: 272784 - 273740 (+)
Type: pfam
Location: 272784 - 273740 (+)
Gene ID: opera_contig_254439_206
Type: TC
Location: 273884 - 275323 (+)
Type: TC
Location: 273884 - 275323 (+)
Gene ID: opera_contig_254439_207
Type: pfam
Location: 275633 - 279076 (-)
Type: pfam
Location: 275633 - 279076 (-)
Gene ID: opera_contig_254439_208
Type: TC
Location: 279073 - 279897 (-)
Type: TC
Location: 279073 - 279897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides propionicigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.